Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01072 ATGTCTCTATTGGTAGACAAAACCAGCACTGGCCGTGAATACAAGGTCAAGGATATGGCGCAGGCTGATTTTGGTCGTCTTGAAATTGATCTCGCTGAGGTTGAAATGCCTGGATTGATGGCTTGCAGAACCGAATATGGACCAGCACTACCTTTCAAGGGAGCAAAAATCACTGGATCTCTTCACATGACGATTCAAACCGCCGTCCTCATTGAAACCCTAACTGCTCTCGGTGCTGAGGTTCGTTGGTGCTCCTGCAACATTTTCTCGACTCAGGACCATGCTGCTGCTGCCATTGCTCGTGATAGTGCCGCCGTGTTTGCCTGGAAGGGGGAGACTCTTCAGGAGTATTGGTGGTGCACTGAGCGGTCCTTGGATTGGGGCCCTGAAGGTGGTCCCGATCTGATCGTCGATGATGGTGGAGATGTTACGCTTTTGATTCACGAAGGAGTTAAGGCGGAGGAGATCTATGAAAAAACAGGGACGCTACCGGATCCTTCTTCAACTACTAACTCAGAGTTGCAGATTGTGTTCACCATTATTCGTGATGGATTGAAGACCGATCCTAAGAGGTACCACAAGATGAAGGAGAGATTGGTCGGTGTTTCGGAGGAGACAACTACTGGTGTGAAAAGGTTGTATCAGATGCAAGCTAATGGAACTTTGCTATTCCCCGCCATTAATGTCAATGATTCTGTCACTAAGAGCAAGTTCGATAACTTGTACGGCTGCCGCCACTCTCTCCCAGATGGTTTGATGAGAGCTACTGATGTTATGATTGCTGGCAAAGTTGCTGTTGTGTGTGGCTATGGAGATGTTGGCAAGGGGTGTGCTTTTGCCCTCAAACAAGGTGGAGCTCGTGTGATCGTCACCGAGATTGACCCAATTTGCGCTCTTCAGGCATTGATGGAAGGCTTCCAGGTCTTGACACTCAACGATGTCGTTTCCGAGGCAGACATTTTCGTCACCACCACAGGCAACAAGGACATCATCATGGTGAGTGACATGAGGAAGATGAAAAACAATGCAATAGTCAGCAACATTGGTCACTTCGATAACGAAATCGACATGCATGGTCTCGAGACTTTCCCTGACGTGAAGCGCATCACGATCAAACCTCAAACTGATAGGTGGGTGTTCCCGGATACTAAAACAGGCATCATCGTGCTTGCCGAGGGGCGGCTAATGAACTTGGGATGTGCCACTGGCCACCCTAGCTTTGTGATGTCCTGCTCATTCACAAACCAAGTGATTGCACAGCTTGAGCTTTGGAATGAGAGGAAAACAGGAAAATATGAGAAAAAAGTGTACGTTTTGCCCAAACATCTTGATGAAAAAGTTGCTGCTCTTCATCTTGGCAAGCTTGGAGCTAAGCTCACTAAGCTCAGTAAGGATCAAGCTGACTATATCAGTGTCCCCATTGAAGGTCCTTACAAGCCTGCTCATTACAGGTATTGA 1458 47.81 MSLLVDKTSTGREYKVKDMAQADFGRLEIDLAEVEMPGLMACRTEYGPALPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERSLDWGPEGGPDLIVDDGGDVTLLIHEGVKAEEIYEKTGTLPDPSSTTNSELQIVFTIIRDGLKTDPKRYHKMKERLVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAFALKQGGARVIVTEIDPICALQALMEGFQVLTLNDVVSEADIFVTTTGNKDIIMVSDMRKMKNNAIVSNIGHFDNEIDMHGLETFPDVKRITIKPQTDRWVFPDTKTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERKTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPIEGPYKPAHYRY* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8515280 8517444 - CsaV3_3G010720.1 Csa03g01072 521977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01072 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 278 IPR020082 -
Csa03g01072 485 Gene3D - 15 485 IPR042172 -
Csa03g01072 485 TIGRFAM ahcY: adenosylhomocysteinase 14 477 IPR000043 -
Csa03g01072 485 SMART AdoHcyase_2 13 484 IPR000043 -
Csa03g01072 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Csa03g01072 485 Gene3D - 243 404 - -
Csa03g01072 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 IPR000043 -
Csa03g01072 485 CDD SAHH 23 473 IPR000043 -
Csa03g01072 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 381 485 - -
Csa03g01072 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Csa03g01072 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Csa03g01072 485 PIRSF SAHH 2 485 IPR000043 -
Csa03g01072 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Csa03g01072 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Csa03g01072 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Csa03g01072 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Csa03g01072 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01072 K01251 AHCY, ahcY; adenosylhomocysteinase [EC:3.13.2.1] - csv:101209658 967.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00951 Csa-Chr2:8971867 Csa03g01072 Csa-Chr3:8515280 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g915 Blo01g00338 Blo12g00101 . Bda08g00043 Bpe04g01085 . Bma04g01161 Bma05g01300 . Cmo17g00096 Cma06g01198 Cma14g01913 . . Sed02g1534 Cpe08g00415 Cpe03g01611 Bhi01g00191 Tan10g0486 Cmetu06g1562 . Hepe05g1781 . Lcy11g1796 Cla06g00769 Cam06g0819 Cec06g0832 Cco06g0838 Clacu06g0820 Cmu06g0794 Cre06g1575 . . . . Lsi05g01864 . Chy05g00572 Cme06g00362 . . Bda11g00666 . Bpe05g01148 Bpe13g00872 . Bma06g01269 Sed09g0173 Cmo06g01235 Cmo14g01966 . Cma17g00091 . . Cpe12g00083 . Bhi12g01487 Tan06g2289 Cmetu05g0404 . Hepe03g0372 . . Cla05g00325 Cam05g0355 Cec05g0357 Cco05g0361 Clacu05g0351 Cmu05g0337 Cre05g0399 Lsi09g01129 Csa03g01072 Chy06g00342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001274 4 2 3 4 3 2 0 2 2 2 2 2 5 2 2 4 2 4 3 2 2 2 3 1 3 2 2 5 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01072 Csa_Chr03 FPKM 3.937815 3.009057 12.482755 13.040003 0.905264 0.0 0.584902 0.0 0.0 0.0