Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01082 ATGAGCATTCAAAGTTCAAATGATCTACATGATTGGAGTTCAAGAGTTATTGAGAGAAGAACAGTGTTGGACTTCGACTTGAATTGTCCACCCCCAGACGAGTGCATTGATCCAACTGGCCTGCCTGATGAAGCAGCGCAATACTACAATCATTACCAAGGACAAGCCACGGACGCCATCGACGAGGACATTGCTATAATTTCTCCTAGGAAGTTTGCTGAAGCCAGGAAGAATTTTCGCAGAAACCACTTTGAGAGTGGCTGTGGTGCAGTCATCAGACGTAATGGCAACACAGAAGTTTATGGTGCTCTCTCAGATGTAACAACTTGGCCCCCTTTTACAATTTGGTCGCCTCTTACAATTAGCAATAATGTATCCTTACAGGAACAACAAACAATTCACAACTTGGACCTTCGCCTAAGCTGTGAAAGCAGTAGTAGGGCCACTAAGGCAAAAACTGACACTGACATTCCTTCTACACTTGCACTAAGTAGTAGCATCCCACCTACAGATAGGACTTTGCGATGTGCAATCTGCATAGAACCATTGGTTGAAGAAACGACAACAAAATGCGGGCACACGAACAACGCGGAGAATCAGAATCTCTCTCGGTTCCGTGCAAACTCAGGCAGAATAAGGAGGAAAATGATGCCGGAATCGATGGAAGCTACACCGTCTGTACCTCCAAGCCTCGATCTCCAAGCAGTTCGCAGCGAGCTGGAAGAGCTGCAGAGATCTTTGGAGGAAAACGAAGAGTCTACGACGGATTCATTAGGTTCTGAGAAGTTACTGAGGGAGTGTGCTCTCCATCTCGAGAGCAGAATACAGCAGGTTCTGTCCGAATACTCTAACGTTGATAGTTTCTTGGGGATTGACGATCTAGATGCATATGTCGAACATATGAAAGAGGAACTTGTCGCGGTGGAAGCTGAAAGCAGCAAAATATCCAATGAGATCGAGGTTCTTAAGAGAACCAATATAGAAGATTCTAATAAATTGAAGATGGATCTTGAAGTATTGAAACTGTCGTTAGATCGTTTTCCTTCACAGGATCCTGAAGAGGCCACATTTAATTGCAGCTCTATGAATGGCGAAGATCCGATGAACGTGATAGTCAACCGTGAATGCAATGCATTTGAGGTTTTGGAACTTGAAAGTCAGATCGAGAAGAACAAAAAAATTCTAAAATCTTTGCAGGAAGTAGATGAGATATTTAAAAGTTTGGATGTTATTGAGCAGGTTGAGGGCACAATTGGTGGTATGAAGGTCATTGACGTCGCTGATAATTCCATTAGATTGTCATTACATACACATATTCCAAACGTGGAAGATTTTTCAACTTTACAAAGACTTGAAGGTTTGATTGAGAAATCTGAATTGGATCACGAGTTGATAATAGAAGTTTTGGATGGGACAATGGAGTTAAAGAATGCTGAGATCTTTCCTGCTGATGTCCACTTGCACGATATCATCAATGCTTCAAAGTCAATCAGCAATTCTTCATTGGAATGGTTTGTAAGAAAAGTACAAGATAGGATTGTTTTGTGTACTCTTAGGCGGTTTGCTGTGAAGAGTGCAAACAAATCATGTCATTCCTTTGAGTATTTGGATCAAGACGAAATGATAATGTGTAGTATGATTGGAGGGATTGATGCGTGTATTAAGGTGTCTCAAGGTTGGCCATTAGCCGATTCTCCTTTGAAACTTATTTCACTCAAGAGCTCAGATCATTATACAAAAGGAGTTTCTTTAAGCCTCATTTGCAAGGTGGAGAAAATGGCAAATTCCTTGGACGCTCATATTCGCCGAAATCTATCAAGCTTTGCAGACGCTGTTGAGAAAATATTGAAGGAGCAGATGCATTTAGAACTCCAAGCTGACAGTGGTTAA 1890 41.75 MSIQSSNDLHDWSSRVIERRTVLDFDLNCPPPDECIDPTGLPDEAAQYYNHYQGQATDAIDEDIAIISPRKFAEARKNFRRNHFESGCGAVIRRNGNTEVYGALSDVTTWPPFTIWSPLTISNNVSLQEQQTIHNLDLRLSCESSSRATKAKTDTDIPSTLALSSSIPPTDRTLRCAICIEPLVEETTTKCGHTNNAENQNLSRFRANSGRIRRKMMPESMEATPSVPPSLDLQAVRSELEELQRSLEENEESTTDSLGSEKLLRECALHLESRIQQVLSEYSNVDSFLGIDDLDAYVEHMKEELVAVEAESSKISNEIEVLKRTNIEDSNKLKMDLEVLKLSLDRFPSQDPEEATFNCSSMNGEDPMNVIVNRECNAFEVLELESQIEKNKKILKSLQEVDEIFKSLDVIEQVEGTIGGMKVIDVADNSIRLSLHTHIPNVEDFSTLQRLEGLIEKSELDHELIIEVLDGTMELKNAEIFPADVHLHDIINASKSISNSSLEWFVRKVQDRIVLCTLRRFAVKSANKSCHSFEYLDQDEMIMCSMIGGIDACIKVSQGWPLADSPLKLISLKSSDHYTKGVSLSLICKVEKMANSLDAHIRRNLSSFADAVEKILKEQMHLELQADSG* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8577215 8585508 - CsaV3_3G010820.1 Csa03g01082 521987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01082 629 Coils Coil 291 325 - -
Csa03g01082 629 Coils Coil 381 401 - -
Csa03g01082 629 Coils Coil 233 253 - -
Csa03g01082 629 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN 222 627 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01082 - - - csv:101211137 790.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01082 Csa-Chr3:8577215 Csa03g02695 Csa-Chr3:25774663 8.63E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g942 . . . . . . . . . . . . Car06g01057 Car14g01705 Sed02g1523 Cpe08g00409 Cpe03g01605 Bhi01g00203 Tan10g0501 Cmetu06g1022 . . . . . . . . . . . . . Cone7ag0406 . Lsi05g01855 . . Cme06g00370 . . Bda11g00340 . . Bpe13g00866 . . . . Cmo14g01959 . . . . . . . . . . . . . Cla05g00334 Cam05g0366 Cec05g0370 Cco05g0371 Clacu05g0361 Cmu05g0346 Cre05g0410 . Csa03g01082 Chy06g00351 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009546 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01082 Csa_Chr03 FPKM 4.213178 4.497817 5.701038 3.121901 4.273593 5.001687 3.559055 0.244593 0.0 0.0