Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01086 ATGGCGAAAGCCGACAACATCCTCCAAACCCTCGGCGACTTCACCAGCAAAGAGAACTGGGACAATTTCTTCACCATACGTGGCCATGGCGATGCTTTTGAGTGGTATGCCGAGTGGCCTGAGCTCAAAGACCCACTCATTTCCCACCTTCCCACCCTCTCAAAATCCCCTTCTCCCCAGATTCTAGTTCCTGGTTGCGGCAACTCCAGCCTCTCTGAGCAGCTTTACGACGCCGGCTTTCGATGTATCACCAACATTGATTTCTCTAAAGTTGCAATCTCTGATATGCTGCGCCGGAACGTAAGAGAACGCCCTGATATGCGGTGGCGCGTCATGGATATGACGAACATGCAGTTCACGAACGACACATTTGATGCTGTCGTTGATAAAGGTGGATTGGATGCTTTAATGGAACCAGAAGTTGGTTCTAAGCTAGGAAGTCAATACTTATCCGAGGTGAAAAGAGTTCTAAAACCAGGAGGAAAATTTATCTGCCTTACCTTAGCAGAATCTCATGTTCTAGGCTTGCTTTTTCCCAAGTTTCGTTTTGGATGGAAAATGAGTATTCATGTCATACCTCCAAAACCACCGTCTAAGCCTAGTTTTCGAACATTTATGGTGGTGGTGGAGAAAGATGAATCTACTGCGTGGCACCAGATAGAATCTTCTTTAAATTTTTCTTCACTTGATTCTCGTGGAGACCAGACTCGTGAACTTGTCCAAAGTCTTGAGAACGAGAATAGAATTCGCGAAAAGTATTCTAGTGGTGATGATTTGTTGTTCTCTCTAGAAGACCTGCAACTTGGAGCAAAGGGAGATCTGCAGAAACTTCACCGAGGCCGTCGAGTTCAATTTACTTTAGGTGGACAAGGGACTTCTATTTTCAGTTACAGAGCTGTACTTCTTGATGCTCGGGAGCATTCTGGCCCATTCTCGTATGAATGTGGAGTTTTTATAGTGCCCAAGACTCGAGCTCATGAATGGCTGTTCTCTTCAGAAGAAGGCCAGTGGATGGTTGTTGAAAGCTCAAAAGCTGCTCGCCTTATAATGGTTCTATTAGATGAAACGCAATCTGGTGCCAACATGGATGCTATTCAGAAAGATTTGTCTCCCCTAGTCAAACAATTGGCACCTGGAGAAGATGACAGTGGATCTCAAATTCCATTTATGATGGCTAGTGATGGAATCAAGGAACGCAATTGTGTTTTCCAGGGTACATCGTCTTTAACTGGTTCAATAGTAGTTGAAGATGTAAAATATGAACATGTAAGCGGCGATGCCAGTCGCATCTTCCCATCTGGAGATTTGATATTCCGCCGTCTTGTTTTCCAAAGAACGGAGAGTTTGGTGCAGTCTGAAGCTTTGTTGACAAGGGAGAGAGTTGATGACAAAGTTTCTGGTCAGATGGACAGGAAAAAGTCTCATGCATCATCCAAATCAAAAAATAAAGGAAAGAAGAGACTTAATAAGGAGTCTAGTGACCAAATGAAGGCTTATCATGGGTACCTGGCAAGTTCTTATCATTCGGGGATCATATCTGGTTTTATGTTGATATCTCAATATTTGGGGAGTGTGGCATCAGCTGGAAAAATGGTGAATGCAGTTGTCATTGGTCTCGGGGCTGGTTTGCTGCCCATGTTCCTCCGTGCATGCATGTCTTTTTTGCACATTGAGGTGGTTGAATTGGATTCAATGATCCTCAATCTTGCACGGGATTACTTCGATTTTACTGAGGATGCAAATTTGAAGGTTCATATTGCTGATGGTATTCAGTTTGTTAGAGAATTCAGAAACTATGGGACAAATGGTTCAACGGTAGCTCTTGATAATGGAAACTCTTCTCAAGTAGAACAAGGAAACAAGAAAGTCGACATACTTATCATAGATGTGGATGCAACAGACTCTAGCTCTGGAATGACCTGCCCAGCGGCTGATTTTGTAGAAGAGTCATTTCTACTGGCAGTGAAAGATGCCCTCTCCGAGCAGGGTCTTTTTATTATAAACTTGGTCACAAGATCTCCAACCGTTAACAATATGGTGGTCACGAGGATGAAAGGAGTCTTCAATCACCTCTTTTCCCTTCAACTTGAGGAGGATGTGAATGAAGTGCTATTTGCTCTTCCTTCAGATTTATGCATAAAGGAGGATCATCTCTTCAATGAAGCATCTCTTCAACTTGAGAAACTTCTAAATTTGAAACACCTAGAAATGAGGCAGAGCATAGTTGATGCTACAACGAAGATCAGATGTTTGAAGTAG 2259 43.2 MAKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPTLSKSPSPQILVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQFTNDTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKFRFGWKMSIHVIPPKPPSKPSFRTFMVVVEKDESTAWHQIESSLNFSSLDSRGDQTRELVQSLENENRIREKYSSGDDLLFSLEDLQLGAKGDLQKLHRGRRVQFTLGGQGTSIFSYRAVLLDAREHSGPFSYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGANMDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVKYEHVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKVSGQMDRKKSHASSKSKNKGKKRLNKESSDQMKAYHGYLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLGAGLLPMFLRACMSFLHIEVVELDSMILNLARDYFDFTEDANLKVHIADGIQFVREFRNYGTNGSTVALDNGNSSQVEQGNKKVDILIIDVDATDSSSGMTCPAADFVEESFLLAVKDALSEQGLFIINLVTRSPTVNNMVVTRMKGVFNHLFSLQLEEDVNEVLFALPSDLCIKEDHLFNEASLQLEKLLNLKHLEMRQSIVDATTKIRCLK* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8610775 8617106 - CsaV3_3G010860.1 Csa03g01086 521991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01086 752 Pfam Spermine/spermidine synthase domain 552 696 - -
Csa03g01086 752 Pfam Methyltransferase domain 63 165 IPR013216 GO:0008168
Csa03g01086 752 CDD AdoMet_MTases 61 165 - -
Csa03g01086 752 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 533 716 IPR029063 -
Csa03g01086 752 Gene3D Vaccinia Virus protein VP39 12 227 IPR029063 -
Csa03g01086 752 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 15 179 IPR029063 -
Csa03g01086 752 MobiDBLite consensus disorder prediction 462 491 - -
Csa03g01086 752 Gene3D Vaccinia Virus protein VP39 480 745 IPR029063 -
Csa03g01086 752 PANTHER EEF1A LYSINE AND N-TERMINAL METHYLTRANSFERASE 12 722 - -
Csa03g01086 752 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 12 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01086 K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase [EC:2.1.1.-] - csv:101211869 1461.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00214 Csa-Chr3:1736046 Csa03g01086 Csa-Chr3:8610775 6.23E-26 dispersed
Csa03g01086 Csa-Chr3:8610775 Csa07g01979 Csa-Chr7:19416304 9.83E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00339 Cam05g0371 Cec05g0375 Cco05g0376 Clacu05g0365 Cmu05g0350 Cre05g0414 . Csa03g01086 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01086 Csa_Chr03 FPKM 3.806584 4.990895 6.727955 7.055028 8.028369 13.598174 9.002192 4.824787 3.645815 8.207082