Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01087 ATGGCAGATACGATATCTAGTTTCTGGGGTCCTGTCACATCTCCTGAGTGGTGTGAAAAGAACTATGTCTACTCTTCTTATATTGCCGAATTCTTCAACACGGTATCAAATATTCCATGCCTCATTTTAGCACTTATTGGTCTCGTGAATGCTTTGAGACAAAGGTTTGAGAAGAGATTTAGTGTTCTTCACATATCAAATATGGTCCTTGCCATAGGAAGCATGTTGTATCACGCCACCTTGCAACGAGTACAACAGCAAGGTGATGAAACACCAATGGTATGGGAAATGCTCCTCTATATCTACATCCTTTATTCACCAGATTGGCACTACCGGAGTACGATGCCTACGTTCTTGTTTCTATATGGAGCTGCCTTTGCTGTTGCTCATGCAATCATACGTTTCGGAGCAGGCTTTAAGGTACATTATGCAATACTTTGTCTTCTCTGCATCCCTCGAATGTACAAGTACTATATTCACACGAACGACGTACACGCGAAGCGGCTTGCAAAGTTATACTTGACGACCATCTCTCTTGGGACCGTTTGCTGGCTTTTCGATCGCTTGTACTGCAGGAAAATCTCTAGCTGGTATTTCAACCCTCAAGGTCATGCATTATGGCATGTATTAATGGGGTTCAATTCTTATTTCGCAAATACATTTTTAATGTTTTGTCGTGCTCAACAACTCGAGTGGAACCCAAGAGTAGTCCACTTTTTGGGGTTGTTTCCATACGTGAAGGTTCAAAAACCAAAGAGCCAGTGA 765 42.22 MADTISSFWGPVTSPEWCEKNYVYSSYIAEFFNTVSNIPCLILALIGLVNALRQRFEKRFSVLHISNMVLAIGSMLYHATLQRVQQQGDETPMVWEMLLYIYILYSPDWHYRSTMPTFLFLYGAAFAVAHAIIRFGAGFKVHYAILCLLCIPRMYKYYIHTNDVHAKRLAKLYLTTISLGTVCWLFDRLYCRKISSWYFNPQGHALWHVLMGFNSYFANTFLMFCRAQQLEWNPRVVHFLGLFPYVKVQKPKSQ* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8618992 8622530 + CsaV3_3G010870.1 Csa03g01087 521992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01087 254 PANTHER ALKALINE CERAMIDASE 1 254 - -
Csa03g01087 254 Pfam Ceramidase 11 236 IPR008901 GO:0006672|GO:0016021|GO:0016811
Csa03g01087 254 PANTHER ALKALINE CERAMIDASE 1 254 IPR044219 GO:0006914|GO:0009651|GO:0098542
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01087 K04711 ACER3, YDC1; dihydroceramidase [EC:3.5.1.-] - csv:101212358 536.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01087 Csa-Chr3:8618992 Csa06g03469 Csa-Chr6:28456520 1.01E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g992 . . . . . . . . . . . Cma14g01901 . Car14g01702 . Cpe08g00404 Cpe03g01601 Bhi01g00219 . . . . . . . . . . . . . . Cone5ag1828 . . Lsi05g01850 . . Cme06g00375 . . Bda11g00343 . . Bpe13g00863 . Bma06g01277 . Cmo06g01246 Cmo14g01954 . . . . . . . . . . . . . Cla05g00340 Cam05g0372 Cec05g0376 Cco05g0377 Clacu05g0366 Cmu05g0351 Cre05g0415 . Csa03g01087 Chy06g00356 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001589 2 5 1 1 2 2 2 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 3 2 2 8 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01087 Csa_Chr03 FPKM 11.40603 13.069587 17.030294 16.921013 25.996416 28.519093 26.41778 24.243792 23.820587 23.544628