Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01090 ATGAGAAGATCCGGGCACCATTTACATCGGTCTCACGTGAAGCAAGGTGCCGGAGGATTGAAGAGCATGATGGGGAGGTTATCAATCGCTGTGGTTGTACTCTTGATCTGCACAATTTCATTGTTCGTTTCATCGACGAGCAAAGGTGGCTTTGGATCCGTCTCTCGATCGGAGATCAAGGCTGAAGAACTTTGGAGCCGTGCTGATTCTCGTGGTTGGAGACCTTCCTCAGCTCCGCGATCAGATTGGCCACCTCCACCGAGTGAGAGCAACGGTTACCTGAAGGTTCGCTGCAATGGTGGTCTGAATCAACAACGCAGTGCTATCTGTAATGCTGTTCTTGCTGCTCGGATTATGAATGCAACACTGGTTCTACCAGAGTTAGATGCAAACTCCTTTTGGCATGAGAAGAGTGGTTTTCATGGTATCTATGATGTTGAAAATTTTATAAGGACCCTGAGATATGATGTACGAATCGTGGAAAGCATTCCAGATATACGCAAGAATGGGAAAACTAAGAAGATAAAACCTTTTCAGCTCCGACCCCCTAGAGATGCTCCAATCAGTTGGTATACTTCAGCTGCTCTTGAGAAGATGAGGGAGCATGGTGCTATATATCTCACTCCATTCTCACATCGTTTAGCAGAAGAAATTGACAATCCTGAGTACCAAAGATTGAGATGCAGGGTTAACTATCACGCTCTGAGATTTAAGCCACATATTTTAAGAATTAGTCAATCAATAGTTGATAAGCTCCGCAATCAAGGCCATTTCATGTCTATTCACCTTCGTTTTGAGATGGATATGCTGGCCTTTGCAGGGTGTTTTGATATTTTTACTCCTGAAGAGCAAAAGATTTTGAAGAAATACCGAGAGGAAAATTTTGCAAAGAAGAGACTGGTTTATAGTGAAAGAAGGGCAATTGGAAAATGTCCCCTAACCCCGGAGGAGGTTGGTCTCATTTTACGTTCCATGGGTTTTGACAATTCTACCAGAATATATCTGGCGGCTGGTGATCTCTTTGGTGGTGAACGATTCATGAAGCCATTTCGTGCTTTGTTTCCCCGTCTTGAGAACCATAGCTCTGTTGAATCTTCAGAGGAACTTGTTGAAAATGTGAGAGGAGTGACAGGTTCTGCAGTTGACTACATGGTTTGTCTCCTTTCTGACATCTTCATGCCAACCTATGATGGACCAAGCAACTTTGCCAACAATTTGCTGGGGCACCGTCTTTATTATGGCTTCCGAACTACAATCAGACCAGACAGGAAAGCTCTTGCACCAATATTCATTGACAGAGAGAACGGAAGAACAACAGGCTTTGAAGAAGCTATTAGGAGAGTAATGCTTGGCACGCACTTTGGCGGGCCACATGATCGCATTTCACCAGAGTCATTCTATACAAATTCTTGGCCTGAATGTTTCTGCCAAATGTCACCGAAAAACCCTGCTGATAAATGTCCACCAGATAACGTGTTGGAGATTTTGAACGGCCAATTGGTGGAAAGTCAAACTGAGAATGATTTGGATGTCTCAACCCAATCAAATTCAACTACCTCAGTACGAAGATGA 1572 43.83 MRRSGHHLHRSHVKQGAGGLKSMMGRLSIAVVVLLICTISLFVSSTSKGGFGSVSRSEIKAEELWSRADSRGWRPSSAPRSDWPPPPSESNGYLKVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHEKSGFHGIYDVENFIRTLRYDVRIVESIPDIRKNGKTKKIKPFQLRPPRDAPISWYTSAALEKMREHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHILRISQSIVDKLRNQGHFMSIHLRFEMDMLAFAGCFDIFTPEEQKILKKYREENFAKKRLVYSERRAIGKCPLTPEEVGLILRSMGFDNSTRIYLAAGDLFGGERFMKPFRALFPRLENHSSVESSEELVENVRGVTGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIDRENGRTTGFEEAIRRVMLGTHFGGPHDRISPESFYTNSWPECFCQMSPKNPADKCPPDNVLEILNGQLVESQTENDLDVSTQSNSTTSVRR* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8653223 8658459 + CsaV3_3G010900.1 Csa03g01090 521995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01090 523 MobiDBLite consensus disorder prediction 503 523 - -
Csa03g01090 523 PANTHER O-FUCOSYLTRANSFERASE 1 15 508 - -
Csa03g01090 523 PIRSF UCP009360 5 480 IPR024709 -
Csa03g01090 523 Pfam GDP-fucose protein O-fucosyltransferase 93 413 IPR019378 -
Csa03g01090 523 PANTHER OS02G0726500 PROTEIN-RELATED 15 508 - -
Csa03g01090 523 CDD O-FucT_plant 93 418 IPR024709 -
Csa03g01090 523 MobiDBLite consensus disorder prediction 70 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01090 - - - csv:101213004 1065.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01090 Csa-Chr3:8653223 Csa05g02483 Csa-Chr5:26544252 7.28E-86 dispersed
Csa04g00976 Csa-Chr4:7514686 Csa03g01090 Csa-Chr3:8653223 1.64E-06 dispersed
Csa03g01090 Csa-Chr3:8653223 Csa03g03119 Csa-Chr3:29131262 1.54E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g998 . . . . . . . . . . . Cma14g01898 Car06g01064 Car14g01699 . Cpe08g00401 Cpe03g01597 Bhi01g00223 . . . . . . . . . . . . . . . . . Lsi05g01846 . . Cme06g00378 . . Bda11g00345 . . Bpe13g00861 . Bma06g01279 . Cmo06g01249 Cmo14g01951 . . . . . . . . . . . . . Cla05g00345 Cam05g0375 Cec05g0379 Cco05g0380 Clacu05g0369 Cmu05g0354 Cre05g0418 . Csa03g01090 Chy06g00360 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003688 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 3 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01090 Csa_Chr03 FPKM 6.869303 8.634055 9.380975 9.147618 14.133862 13.589872 13.143052 7.602678 6.035958 6.868685