Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01091 ATGGGGAAGAAAGTTAAGAAGAAGACGAACCGAGCTCCTCCAAAAGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAACCAAGCAACACAACGGTGGAGACTGCTGATGAGGAGATTTCAATTGTGAAGGAGAAAAGCCAATGCGGTCATCTTGATAAATGCTTTAATTTAAATGAGTTATCATCTAAACTTGGGTCCGCGGAACCTATTAGCTGTGAAGATTGTCAAGATAGTTCAGCTGATAGAAGGGGAGGTAGAGGGAAGGCTAGACATGGGAAGAAAAAAGGGGGAACTTCTGTGGATGTAAAAACTGATGCTAAAGCAATTTGGATTTGTTTGCAATGTGGGCATTATGCCTGTGGGGGTATTGGACTTCCTACAAACTCTCAGAGTCATGCCGTTCGACATGTCAGGCAAACTCGTCACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACATTACTTCCAGTAGAGAAAACTGAAGAGAATGGTGAACAAAAGGATAGCTTGTCTAATGTGGTGAAATTAATTAGGGACCGGTCGATGGAATCCACGCATGTGGATGTTGAGAACACGCGGTACACTAGTAGTGAAGTTACAGCCGCAACTAAACCAGAAAGTTCAGTATTAAGTGATTTGGATAGAAGAAATCAATATATTGTAAAAGGATTGATTAATCTTGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTCTTGGCCATTGATATGTTGAGAGATCATTTTGTGAAATTGGAAGAATGTGTTGGACCTTTAACTATAGCTTTGAAGAAGATCTTTATAGAAGCAAGAACGGAAAGCAGAATGAAAAGTTCAATAAATCCGAGATCAGTTTTTGGTTGCATCTCTTCCAAAGCTCCTCAGTTCAAAGGATATGAACAACATGACAGTCATGAATTGCTCCGTGTCCTACTTGATGCATTGTCTTCTGAAGAGCTGACTTCAAGGAAGATGACAAATTCTAAGGAAGAGAGAATATCTGGAAATCCCACTCCTACTTTTGTTGACGAGATGTTTGGAGGGCAAATATCAAGTGCCGTATGTTGCAAAGAATGTGGCCATACATCGACAGTTTACGAACCATTTCTAGATCTCTCTCTTCCCGTTCCAATGAAGAAGCCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGAGCTAAGAAGACAAAAGTGCCACCCAAGAGAAATGGAAAGACAATTCCTAAAACTAACAAGGTTTCAGATATTGTACCAATTCAAATTGCCTCAGTTCCATCATCTAGTAATGAGTCTTCCCTTCCATCAGAGGCCAGTGCCAGTAGCACAACTACCATTATGGAGAAGACTTCAACTTCTCAGAATGTCTCAGATGCTAAAGAGTCTGGAAAAGAAATTTCGGTTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACTTGGATGGATTTTCTTGAACCAGAACTGAATGCTGACAATTGTGATATTTCCACTACTCAGGATTCTGAAAATAATATTGAAGTATTTATTAGTGACAATTCACAACAAAGCGTTTCTGGGTTGAGTATGCCAGTTTCATCCCTTCACAGTGAGCCCAATCAACGACCAGATTTTTCTTCAGTAAATTCGTGGAATGATGAAGCTCCTTTACAGGTGCAAGCCTCTGAAGTTTTGCTGCTTCCTTACAAGGAAGAGAGTTCCACTGCTGAAGTAGCAAAAGAAGATGATCAGGCTTCCTCATCAATTTTGGGCTGTGCTCAAGAAGATTTTGATGGATTTGGTCTTGGTGATATGTTTGATGAGCCTGAAATTCCTATAGGGCCCATTGGGAGACCCTCCACTTCAAATGAAGTTGCAGAAAGTAGTTTTAATAGTGAGTCTGATCCTGAGGAAGTTGATAATACTGATGCTCCCGTCTCTGTGGAGAGTTGTCTCACTTTTTTCACAAAGCCGGAACTTCTGTCCAACGAAAATGGATATAACTGTGAGAAATGCTCAAAAAGACTACAACAACAGAGGTTGGAAATGAAGAAGCAATCAAAGGTTGCTTGCAAAGCTGTAGCAAATGGATGCCAAACTGCAGTAGGGGGTGATATATCTAGTTGCAACGAGGACTCTTCAGTTGAAGTAAAAAATAAAAGAAATATGAATTTAACAAATGGTTCTATAAGTTATAGTAGTGGTGAAAGCTCTAATTTGAAAAAAAATGTAGATTGTTCCAGTCAAGATTGCTCAAAACCTGTCAATTGCCAGAAAAGCAAGACAGATCCCCCCGTTTTGGATGAGGATGAAGCGAAGGTTGACAAAGATATGAATCCTGGCCTATCACGTTCTTCGGGTTGTAATAACACCCGCAATCAAGAGAATTCAGATGATAAATCCAGTTGTTCTCTTCCCAACGATGAACCTGCAAAAACTAATATTGAGCACTTGAGTTCACATCTAGCTGTCGGTAACCAATCAGAAAAAAGTGAAGATGGTGAGATGGATTCTGATTCAACAATTGTGAATGTGAAGAGAGATGCAACAAAGAGGTTTCTCATACACAAAGCCCCTCCTATCTTGACAATTCATATGAAGAGGTTCAGTCCTGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCATGTCAGATTCAAGGAAACAATTGATCTCAAACCATACCTGGATACAAGGTGTGCTGATAGGGACAAGTGTAGTTATCGGTTGGTCGGGGTCGTGGAGCACTCTGGATCTATGAGAGGAGGTCATTATGTTGCATATGTGAGAGGGGGCAACAGGAAGAGGAGCAGTGGGGAAGCTGAGGAAGATGCTTCTGTTTGGTATTATGCTAGTGATGCTGTCGTAGATGAGGTTACCCTGGATCGGGTTCTTGGATGCGAGGCATACATCCTATTTTATGAGATAACATGA 2943 41.08 MGKKVKKKTNRAPPKEKRVSSSSPRKVPQPSNTTVETADEEISIVKEKSQCGHLDKCFNLNELSSKLGSAEPISCEDCQDSSADRRGGRGKARHGKKKGGTSVDVKTDAKAIWICLQCGHYACGGIGLPTNSQSHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDSLSNVVKLIRDRSMESTHVDVENTRYTSSEVTAATKPESSVLSDLDRRNQYIVKGLINLGNTCFFNSILQNLLAIDMLRDHFVKLEECVGPLTIALKKIFIEARTESRMKSSINPRSVFGCISSKAPQFKGYEQHDSHELLRVLLDALSSEELTSRKMTNSKEERISGNPTPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKPLAKKVQPVSRAKKTKVPPKRNGKTIPKTNKVSDIVPIQIASVPSSSNESSLPSEASASSTTTIMEKTSTSQNVSDAKESGKEISVENGGECASDNLTWMDFLEPELNADNCDISTTQDSENNIEVFISDNSQQSVSGLSMPVSSLHSEPNQRPDFSSVNSWNDEAPLQVQASEVLLLPYKEESSTAEVAKEDDQASSSILGCAQEDFDGFGLGDMFDEPEIPIGPIGRPSTSNEVAESSFNSESDPEEVDNTDAPVSVESCLTFFTKPELLSNENGYNCEKCSKRLQQQRLEMKKQSKVACKAVANGCQTAVGGDISSCNEDSSVEVKNKRNMNLTNGSISYSSGESSNLKKNVDCSSQDCSKPVNCQKSKTDPPVLDEDEAKVDKDMNPGLSRSSGCNNTRNQENSDDKSSCSLPNDEPAKTNIEHLSSHLAVGNQSEKSEDGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHMKRFSPDARGRYSKLNGHVRFKETIDLKPYLDTRCADRDKCSYRLVGVVEHSGSMRGGHYVAYVRGGNRKRSSGEAEEDASVWYYASDAVVDEVTLDRVLGCEAYILFYEIT* 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8658465 8664071 - CsaV3_3G010910.1 Csa03g01091 521996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01091 980 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 978 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 766 781 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 435 471 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 435 481 - -
Csa03g01091 980 SUPERFAMILY Cysteine proteinases 232 978 IPR038765 -
Csa03g01091 980 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 165 IPR001607 GO:0008270
Csa03g01091 980 MobiDBLite consensus disorder prediction 23 39 - -
Csa03g01091 980 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
Csa03g01091 980 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
Csa03g01091 980 MobiDBLite consensus disorder prediction 616 646 - -
Csa03g01091 980 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 978 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 752 815 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 1 40 - -
Csa03g01091 980 Pfam Ubiquitin carboxyl-terminal hydrolase 234 977 IPR001394 GO:0004843|GO:0016579
Csa03g01091 980 MobiDBLite consensus disorder prediction 396 423 - -
Csa03g01091 980 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 911 928 IPR018200 GO:0004843|GO:0006511
Csa03g01091 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 188 IPR013083 -
Csa03g01091 980 ProSiteProfiles Zinc finger UBP-type profile. 49 186 IPR001607 GO:0008270
Csa03g01091 980 SUPERFAMILY RING/U-box 50 165 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 785 812 - -
Csa03g01091 980 Gene3D Cysteine proteinases 215 428 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 398 413 - -
Csa03g01091 980 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 980 IPR028889 -
Csa03g01091 980 MobiDBLite consensus disorder prediction 527 550 - -
Csa03g01091 980 MobiDBLite consensus disorder prediction 72 102 - -
Csa03g01091 980 Gene3D Cysteine proteinases 739 980 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01091 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1895.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01091 Csa-Chr3:8658465 Csa05g00158 Csa-Chr5:870602 1.71E-08 dispersed
Csa03g01091 Csa-Chr3:8658465 Csa06g02478 Csa-Chr6:22051610 9.62E-14 transposed
Csa03g01091 Csa-Chr3:8658465 Csa02g02216 Csa-Chr2:19919928 3.79E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01091 Csa_Chr03 FPKM 0.989644 0.981414 0.0 0.147355 2.195323 1.63249 1.866215 0.0 0.0 0.0