Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01093 ATGAATGTCAAGGGGGATCGTGTTGAATTGGAAGGTGAAGCGTCAGGTAGTTCCTCTTTTAAAATCAGATCACCACAAGCTATGGTTTATGGAGACTATCCCAGTGTCAATGAATTGCATTGTGGGGATGGTGGGGATCGCAGGAAGGTCATATCAGCATCTTCGTATGTCATTTCGCAGGCGGATGTGGAACTTGAAGACCTTTCTCGTTCTCCTTCAAGCTTCAGTGGATTTGGGAATGACAATACCGAGGATGATGGGTTCTTTTCTGTTGATTCTGGAGATGAAAGGGAGGATTCATCAGACAACAGCGATCAATATAAAGTATTTCCGGATCTTGAACTAGATGATTCTTGTGATGAGAAAATATGTGCAGAGATGTGTGAAGCCTCTGTTGCAGAGGCTGGGAACAGCTGCAGAAGGGAGTTACGCTTGGATGGTAATGAGAGTGATACAATCAAACAATTGGAACAAGCACTTGAAGAAGAACAGTCGGTTCGTGCTGCCTTGTACCTGGAGCTTGAGAAAGAGAGAAGTGCTGCTGCCACCGCTGCTGATGAGGCCATGGCCATGATATTACGTCTTCAGGAGGAGAAGGCATCTATAGAAATGGATGCTAGGCAATATCAGAGGATGATAGAGGAGAAGACTGCTTATGATGCTGAAGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGGGAGCGGGAAATGCATTTTCTAGAGAAGGAAATCGAAGCTTTACGGACAAGTTTCTTTGAGTATGACGGAGTAGGTGTTGATATGCTTGACTCGGAAGTTACACCCCCAAGGGCCCCTTCTTTCACCTATCCAACTGAAGATCCATGTATTAATATATTCAACAAAAAACATTCTTTGCAACATGAGATACCATCAGTGGGATCACAAAAATTAACTTTTGAGTTTGGGGAAGAGTCGCCATCTATTGGAGCGGATGAAACTGCTGATGCTGCAAAAGCTAGGGGGATGTTGTTGCTCCAAGTTCCTGATATCTACAAGGGTAGTGAAGAGATTGACTATGAGTTACAAGGTAAGGACATGGTAGAGGATGAAAATTTATACGTTGTACCAGGAAAAGTAACTGAATTAGAGCCATATTTGCAAAGCAATGAGTCAAATGCTCTAGGTAAGGTTGAGAAATGCACGGAATTGATTGCAGATGAACAAGAAGTCCACGAAGTGTCATATGATGGGTTGGCTTTTGCTAAAACAACTCTTCCTTGTCATGAAAAGAATGGTGACCATCAACGAACAAGAGATCTCTACTCTGTGAACAATACAGATCCCCATCTTCATGATATTCATGTTGTTGAAGATGAAGCTAAAACTTCAAATGAAGCAGTTGATAATGCAAGTGAAGAACCTTTGGTCAATGGTACCTCGAATATTCCAGGTAAATGTGACAGTCCATCCTTCAGTTTGTTGCAGAATGAACTAGACTTCACGAGAAGCAGCTCAGATGCCTCTGGAAGATTTCCACCAATTGCTCGTTCTCGAAGCCATTCCATGCGATCACAATTGCGTAGAAACTCGATGTCTGCAGTTGATTATGAAAGGTCAAAAATTGGCAATGAAGTTGAGTGGCTCAGAGGAAGGCTAAAGATTGTTCAAGAGGGAAGAGAAAAACTCAAGTTCTCTGTGGAGCACAAAGAGAAGGAAAGCAATCAGTTTCAACTTTTAGAAAACATAACAAATCAACATCGCGAAATCCGACAACTAACGGATCCTGGAAAGGCATCTCTCCAGGCTCCACTGCCTCCATCCTCAAAGGATGTGTCAAAGAAGCGTTGCTGGCGAAGTTCGTCCTTGAGCGTTCACAGAAGCAGCTAA 1851 42.73 MNVKGDRVELEGEASGSSSFKIRSPQAMVYGDYPSVNELHCGDGGDRRKVISASSYVISQADVELEDLSRSPSSFSGFGNDNTEDDGFFSVDSGDEREDSSDNSDQYKVFPDLELDDSCDEKICAEMCEASVAEAGNSCRRELRLDGNESDTIKQLEQALEEEQSVRAALYLELEKERSAAATAADEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEIEALRTSFFEYDGVGVDMLDSEVTPPRAPSFTYPTEDPCINIFNKKHSLQHEIPSVGSQKLTFEFGEESPSIGADETADAAKARGMLLLQVPDIYKGSEEIDYELQGKDMVEDENLYVVPGKVTELEPYLQSNESNALGKVEKCTELIADEQEVHEVSYDGLAFAKTTLPCHEKNGDHQRTRDLYSVNNTDPHLHDIHVVEDEAKTSNEAVDNASEEPLVNGTSNIPGKCDSPSFSLLQNELDFTRSSSDASGRFPPIARSRSHSMRSQLRRNSMSAVDYERSKIGNEVEWLRGRLKIVQEGREKLKFSVEHKEKESNQFQLLENITNQHREIRQLTDPGKASLQAPLPPSSKDVSKKRCWRSSSLSVHRSS* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8665307 8670413 - CsaV3_3G010930.1 Csa03g01093 521998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01093 616 Coils Coil 185 212 - -
Csa03g01093 616 MobiDBLite consensus disorder prediction 492 514 - -
Csa03g01093 616 MobiDBLite consensus disorder prediction 93 107 - -
Csa03g01093 616 Coils Coil 231 251 - -
Csa03g01093 616 ProSiteProfiles GTD-binding domain profile. 151 249 IPR007656 -
Csa03g01093 616 Coils Coil 441 461 - -
Csa03g01093 616 MobiDBLite consensus disorder prediction 69 87 - -
Csa03g01093 616 PANTHER BNAANNG28530D PROTEIN 6 602 - -
Csa03g01093 616 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g01093 616 Coils Coil 153 173 - -
Csa03g01093 616 Pfam Zein-binding 155 245 IPR007656 -
Csa03g01093 616 PANTHER BNAANNG28530D PROTEIN 6 602 - -
Csa03g01093 616 MobiDBLite consensus disorder prediction 581 616 - -
Csa03g01093 616 MobiDBLite consensus disorder prediction 69 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01093 - - - csv:101204513 1197.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01093 Csa-Chr3:8665307 Csa05g02013 Csa-Chr5:23491256 4.13E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01093 Csa_Chr03 FPKM 10.329803 11.347087 8.194715 8.160128 11.43815 10.191738 12.226534 9.944895 8.149744 9.131356