Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01095 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCCACCATTACGGCGCTGCCGATGGACGGCGGCGGGGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGTGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCAGACAAAGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTTGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCTAAGGATGAGAGTCAAGAAACAAGTTCCTCGTCGTCGCCGTCGTCGAGAATAATGGCACAGGATCTGAATGATGGTTTCCAGGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGACATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAACGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCATCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCAAAAGAGATGGCACCATTGGAGACTCAGAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTTTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTAACATCAGCTGGTAGCCCGGTTTCCCCAATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCGGTCTTCAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCTCGGCATGACGTCTAA 909 51.05 MLSGFSQEPAGMYSTITALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDESQETSSSSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMALEGNARHDV* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8674955 8679477 - CsaV3_3G010950.1 Csa03g01095 522000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01095 302 MobiDBLite consensus disorder prediction 119 133 - -
Csa03g01095 302 Coils Coil 200 220 - -
Csa03g01095 302 Pfam Myb-like DNA-binding domain 53 103 IPR001005 -
Csa03g01095 302 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Csa03g01095 302 Gene3D - 49 108 - -
Csa03g01095 302 MobiDBLite consensus disorder prediction 108 133 - -
Csa03g01095 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Csa03g01095 302 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Csa03g01095 302 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Csa03g01095 302 MobiDBLite consensus disorder prediction 273 302 - -
Csa03g01095 302 PANTHER PROTEIN PHR1-LIKE 2 12 301 - -
Csa03g01095 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 301 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01095 Csa-Chr3:8674955 Csa06g01145 Csa-Chr6:9545350 1.48E-67 dispersed
Csa03g01095 Csa-Chr3:8674955 Csa07g01218 Csa-Chr7:11974425 1.23E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31161 PF00249 Myb_DNA-binding 1.80E-07 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01095 - - csv:101213244 553.132