Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01099 ATGTCGTCAGCGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTTGTTTTCTCCTGTATGGGAGCTGCTTACGGCACGGCGAAGAGCGGTGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTAATGAAGTCTATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGAATTAACCCCAAGGCTAAATCTTATTACCTTTTCGATGGTTACGCTCATCTCTCCTCTGGGCTTGCTTGTGGTCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGAATCGTCGGGGATGCGGGCGTCAGGGCCAACGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTTTATGGACTTATTGTTGGTATTATTCTCTCCTCTCGAGCTGGTCAGTCAAGAGCTGAATAA 498 49.2 MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8696334 8699204 + CsaV3_3G010990.1 Csa03g01099 522004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01099 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Csa03g01099 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Csa03g01099 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Csa03g01099 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Csa03g01099 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g01099 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g01099 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g01099 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa03g01099 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Csa03g01099 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Csa03g01099 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Csa03g01099 165 Gene3D - 11 162 IPR035921 -
Csa03g01099 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Csa03g01099 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02112 Csa-Chr2:19193914 Csa03g01099 Csa-Chr3:8696334 4.09E-112 dispersed
Csa02g02113 Csa-Chr2:19198082 Csa03g01099 Csa-Chr3:8696334 1.74E-112 dispersed
Csa03g01099 Csa-Chr3:8696334 Csa03g04355 Csa-Chr3:38036988 4.92E-21 dispersed
Csa03g01099 Csa-Chr3:8696334 Csa02g02355 Csa-Chr2:20918573 8.17E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01099 K02155 - csv:101213721 288.115