Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01101 ATGCATTTAGTAAACCCGATGGAAAAAGACGATAACTACTCGAACGAAGGCTCTATGGCTCCAAGTTTCTCCAGCCACCAAGATCTGTACAATAACCAAGACCAATTCATGAGGTCTCGCCCTAATTTCGAAACCTCCGCCGACAACTCCACCGGAATCCTCACCTACTTTCCGCCCAACCCAATTACCTCTCCGGACAAGCTTAGCTTTGGCGAGGTTATGCAGTTCGCCGACTTCGGTCCCAAGCTCAGTCTCAACCGCTTCGACGACGACGATAGCGAACCCCCCGGCATCGACCCGGTCTACTTCCTAAAATTCCCAGTTTTAAATAACGAGAGGGTGGAGGACACGGCGGGGGGCGGAGAGACGGAGGAAGCGGCGGAGATAGGAGGGAGATCGTTAGTTGTTGGGGAATTAGAAGAGGAGAATTTTAGGAGTAACAACAACAACAACAACAATAATGGGAACAATGGGAATAATAATAATAATAACAAAAGGAAAAGAGGACGAACGGTGAAGACAAGTGAAGAAGTGGAGAGTCAAAGGATGACACATATTGCGGTGGAGAGAAACCGAAGGAAGCAGATGAATGAGCATCTTCGTGTTCTGCGATCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGTGGAGCAATCGAGTTCGTGAGAGAGTTAGAGCAACTCCTACAATGTCTAGAATCCCAAAAACGACGTCGTCTTTTAGGAGAACCACCAATAGTGCAAGCTGCGGACACACCACCGCAGCAACAACCTCCATTTCTACCACCAGGAGCAGTTAATTTTCCAGGCCATCAAAACGATGCACAAATATTTGAAACGACAGCAGAAAGCAAATCGTGCCTTGCAGACGTGGAAGTGAAGGTAGTAGGGTTTGACGCTATGATAAAAATCCTATCAAGAAGACGACCGGGACAACTCATCAAAGCCATCGCAGCACTTGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAAACTGTTCTTTATTCTTTCAACGTCAAGATAGCTAGCGAATCAAGATTTACCGCTGAAGATATAGCAAGCTCAGTTCAACAAATATTCAATTTTATTCATGCAAACACTGGCATGTGA 1146 45.55 MHLVNPMEKDDNYSNEGSMAPSFSSHQDLYNNQDQFMRSRPNFETSADNSTGILTYFPPNPITSPDKLSFGEVMQFADFGPKLSLNRFDDDDSEPPGIDPVYFLKFPVLNNERVEDTAGGGETEEAAEIGGRSLVVGELEEENFRSNNNNNNNNGNNGNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPIVQAADTPPQQQPPFLPPGAVNFPGHQNDAQIFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFNFIHANTGM* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8707121 8711973 - CsaV3_3G011010.1 Csa03g01101 522006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01101 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 248 IPR036638 GO:0046983
Csa03g01101 381 PANTHER TRANSCRIPTION FACTOR FAMA 36 380 - -
Csa03g01101 381 SMART finulus 186 237 IPR011598 GO:0046983
Csa03g01101 381 MobiDBLite consensus disorder prediction 169 183 - -
Csa03g01101 381 MobiDBLite consensus disorder prediction 144 165 - -
Csa03g01101 381 MobiDBLite consensus disorder prediction 11 27 - -
Csa03g01101 381 CDD ACT_UUR-ACR-like 307 371 - -
Csa03g01101 381 MobiDBLite consensus disorder prediction 144 183 - -
Csa03g01101 381 Gene3D - 170 246 IPR036638 GO:0046983
Csa03g01101 381 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Csa03g01101 381 CDD bHLH_AtFAMA_like 183 251 - -
Csa03g01101 381 ProSiteProfiles ACT domain profile. 307 381 IPR002912 -
Csa03g01101 381 PANTHER TRANSCRIPTION FACTOR FAMA 36 380 IPR044283 GO:0003700|GO:0010052
Csa03g01101 381 MobiDBLite consensus disorder prediction 1 27 - -
Csa03g01101 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00709 Csa-Chr3:6381666 Csa03g01101 Csa-Chr3:8707121 4.57E-53 dispersed
Csa03g01101 Csa-Chr3:8707121 Csa03g01369 Csa-Chr3:10293079 2.58E-52 dispersed
Csa03g01101 Csa-Chr3:8707121 Csa03g00171 Csa-Chr3:1295970 6.38E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31162 PF00010 HLH 7.90E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01101 - - csv:101214530 688.723