Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01102 ATGTACCTACTACCAAATCTCAATTTTCAGTTTGACAATCCACAATTCTCCATTTGCTTAATTACCCCTTTCCCCTTTCTGTATATATTGTTTGTTTCTCTTCTTCTTCTTCCTCTTTCATCCTTGTTTTCTTCGCCCACTTTCCCCTTTCCTCTGCTTCTCAATCGGATCCAATCCGACCCATCAATCCAATTCCACGTAATGGGTAGCGGAGAAAAGGTCTTCACTTTGAAGGAAGTCGCTGAACACAACAATCACAAGGATTGTTGGCTCATCATCAGTGGCAAGGTGTATGATGTGACCAAGTTTTTAGAAGACCACCCTGGTGGTGATGATGTTTTGCTATCAGCTACAGGGAAAGACGCAACCGACGACTTTGAAGACGTGGGGCACAGTGACAATGCAAGAGAAATGATGGATCAATACTACGTTGGGGAGATTGATTCTTCAACAATTCCAAAGAAGGTCGCCTACACGCCTCCAAAACAGCCTCATTACAATCAGGACAAGACATCCGAATTCATCATCAAGCTTCTCCAGTTCCTTGTCCCGCTTGCGATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 606 44.06 MYLLPNLNFQFDNPQFSICLITPFPFLYILFVSLLLLPLSSLFSSPTFPFPLLLNRIQSDPSIQFHVMGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDSSTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8715763 8719524 + CsaV3_3G011020.1 Csa03g01102 522007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01102 201 SMART Cyt_b5_2 75 148 IPR001199 -
Csa03g01102 201 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 72 157 IPR036400 -
Csa03g01102 201 Pfam Cytochrome b5-like Heme/Steroid binding domain 76 147 IPR001199 -
Csa03g01102 201 PANTHER CYTOCHROME B5 68 199 - -
Csa03g01102 201 Gene3D - 68 153 IPR036400 -
Csa03g01102 201 PANTHER CYTOCHROME B5 68 199 - -
Csa03g01102 201 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 72 148 IPR001199 -
Csa03g01102 201 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 103 110 IPR018506 GO:0020037
Csa03g01102 201 PRINTS Cytochrome B5 signature 97 107 IPR001199 -
Csa03g01102 201 PRINTS Cytochrome B5 signature 107 121 IPR001199 -
Csa03g01102 201 PRINTS Cytochrome B5 signature 122 129 IPR001199 -
Csa03g01102 201 PRINTS Cytochrome B5 signature 135 147 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01102 K23490 CYB5; cytochrome b5 - csv:101214209 371.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00093 Csa-Chr2:622857 Csa03g01102 Csa-Chr3:8715763 4.82E-18 dispersed
Csa03g00777 Csa-Chr3:6794685 Csa03g01102 Csa-Chr3:8715763 3.61E-46 dispersed
Csa03g01102 Csa-Chr3:8715763 Csa05g00025 Csa-Chr5:116589 3.66E-66 dispersed
Csa02g00931 Csa-Chr2:8786198 Csa03g01102 Csa-Chr3:8715763 4.52E-76 transposed
Csa06g02086 Csa-Chr6:18617774 Csa03g01102 Csa-Chr3:8715763 5.40E-35 transposed
Csa07g01998 Csa-Chr7:19542777 Csa03g01102 Csa-Chr3:8715763 2.93E-11 transposed
Csa03g01102 Csa-Chr3:8715763 Csa03g02688 Csa-Chr3:25692835 4.17E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01102 Csa_Chr03 FPKM 12.189946 11.920048 15.97763 17.4911 22.392025 28.311663 23.909958 16.217945 15.690983 15.941838