Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01102 ATGTACCTACTACCAAATCTCAATTTTCAGTTTGACAATCCACAATTCTCCATTTGCTTAATTACCCCTTTCCCCTTTCTGTATATATTGTTTGTTTCTCTTCTTCTTCTTCCTCTTTCATCCTTGTTTTCTTCGCCCACTTTCCCCTTTCCTCTGCTTCTCAATCGGATCCAATCCGACCCATCAATCCAATTCCACGTAATGGGTAGCGGAGAAAAGGTCTTCACTTTGAAGGAAGTCGCTGAACACAACAATCACAAGGATTGTTGGCTCATCATCAGTGGCAAGGTGTATGATGTGACCAAGTTTTTAGAAGACCACCCTGGTGGTGATGATGTTTTGCTATCAGCTACAGGGAAAGACGCAACCGACGACTTTGAAGACGTGGGGCACAGTGACAATGCAAGAGAAATGATGGATCAATACTACGTTGGGGAGATTGATTCTTCAACAATTCCAAAGAAGGTCGCCTACACGCCTCCAAAACAGCCTCATTACAATCAGGACAAGACATCCGAATTCATCATCAAGCTTCTCCAGTTCCTTGTCCCGCTTGCGATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 606 44.06 MYLLPNLNFQFDNPQFSICLITPFPFLYILFVSLLLLPLSSLFSSPTFPFPLLLNRIQSDPSIQFHVMGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDSSTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8715763 8719524 + CsaV3_3G011020.1 Csa03g01102 522007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01102 201 SMART Cyt_b5_2 75 148 IPR001199 -
Csa03g01102 201 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 72 157 IPR036400 -
Csa03g01102 201 Pfam Cytochrome b5-like Heme/Steroid binding domain 76 147 IPR001199 -
Csa03g01102 201 PANTHER CYTOCHROME B5 68 199 - -
Csa03g01102 201 Gene3D - 68 153 IPR036400 -
Csa03g01102 201 PANTHER CYTOCHROME B5 68 199 - -
Csa03g01102 201 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 72 148 IPR001199 -
Csa03g01102 201 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 103 110 IPR018506 GO:0020037
Csa03g01102 201 PRINTS Cytochrome B5 signature 97 107 IPR001199 -
Csa03g01102 201 PRINTS Cytochrome B5 signature 107 121 IPR001199 -
Csa03g01102 201 PRINTS Cytochrome B5 signature 122 129 IPR001199 -
Csa03g01102 201 PRINTS Cytochrome B5 signature 135 147 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00093 Csa-Chr2:622857 Csa03g01102 Csa-Chr3:8715763 4.82E-18 dispersed
Csa03g00777 Csa-Chr3:6794685 Csa03g01102 Csa-Chr3:8715763 3.61E-46 dispersed
Csa03g01102 Csa-Chr3:8715763 Csa05g00025 Csa-Chr5:116589 3.66E-66 dispersed
Csa02g00931 Csa-Chr2:8786198 Csa03g01102 Csa-Chr3:8715763 4.52E-76 transposed
Csa06g02086 Csa-Chr6:18617774 Csa03g01102 Csa-Chr3:8715763 5.40E-35 transposed
Csa07g01998 Csa-Chr7:19542777 Csa03g01102 Csa-Chr3:8715763 2.93E-11 transposed
Csa03g01102 Csa-Chr3:8715763 Csa03g02688 Csa-Chr3:25692835 4.17E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01102 K23490 - csv:101214209 371.318