Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01103 ATGGGTAAATACATCAGAAAATCCAAATCCTCTCGTGAAATCACCCTCATCGATGCCTCTCAATCCTCCTCCTACATTGGCGTTCGCACTCGTGCCAAAACCCTAGCTCTTCAGCGCCTTCAGAAGACCTCCAATTCTCCCCCCACTTCCCCTTCTCCCACCACCTCCGGTTCCTATCTCCAGCTCCGCAGTCGCCGCCTTCACAAACCCTCCAGTACTGCTCTTCCCAAGCAGAAATTGCCCCAGGGGACTACTAATGCTCGTGGCCGAAGAGTTTCTGCTGATTCCAGAGGAACCTCTAGGTTGGGGGTTTGCTCCGTTGCTGCTGGTTCTATTGAGTCTGTCTCGCCTCGGCGGGATGATGCGGTTCAGGAATTGGTGGTTAAACAGAGTGAGGTTCAGGAAAATTTTAATGTTCATGACATTCAGGAAGAAGCCTCGTTTGGTGAGAATCTCTTGGATTTTGAAGGTGGAATGAGTAGGGAATCAACTCCTTGCAGTTTGATAAGGAAGCCCGAGAGCATACGAACACCCAGTTCTTCTACAAAGGCGTCGAGTACCACCGATGATAGGATACAGCTGCAGAACTCCTCTGCTACAGATGTACCAACCGCTCGGGAAGTTGACGATTTCTTCAACTGCGCCGAAGGAGAGCAGCAGAGAAAATTCATTGAGAAGTATAACTTTGACCCGATCACAGACAAGCCACTTCCCGGACGTTACGAATGGGAGAAATTGGATGATTAG 747 49.8 MGKYIRKSKSSREITLIDASQSSSYIGVRTRAKTLALQRLQKTSNSPPTSPSPTTSGSYLQLRSRRLHKPSSTALPKQKLPQGTTNARGRRVSADSRGTSRLGVCSVAAGSIESVSPRRDDAVQELVVKQSEVQENFNVHDIQEEASFGENLLDFEGGMSRESTPCSLIRKPESIRTPSSSTKASSTTDDRIQLQNSSATDVPTAREVDDFFNCAEGEQQRKFIEKYNFDPITDKPLPGRYEWEKLDD* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8719914 8725611 - CsaV3_3G011030.1 Csa03g01103 522008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01103 248 MobiDBLite consensus disorder prediction 173 203 - -
Csa03g01103 248 MobiDBLite consensus disorder prediction 75 93 - -
Csa03g01103 248 MobiDBLite consensus disorder prediction 37 98 - -
Csa03g01103 248 Pfam Cyclin-dependent kinase inhibitor 203 246 IPR003175 GO:0004861|GO:0005634|GO:0051726
Csa03g01103 248 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4 1 247 - -
Csa03g01103 248 Gene3D p27 194 248 IPR044898 -
Csa03g01103 248 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 1 247 IPR044275 GO:0004861|GO:0045736|GO:0051726
Csa03g01103 248 MobiDBLite consensus disorder prediction 171 204 - -
Csa03g01103 248 MobiDBLite consensus disorder prediction 37 68 - -
Csa03g01103 248 PIRSF CKI_KRP_plant 1 102 IPR044275 GO:0004861|GO:0045736|GO:0051726
Csa03g01103 248 PIRSF CKI_KRP_plant 80 248 IPR044275 GO:0004861|GO:0045736|GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01103 - - - csv:101215012 469.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g00930 Csa03g01103 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01103 Csa-Chr3:8719914 Csa07g01503 Csa-Chr7:15410612 2.37E-21 dispersed
Csa02g00930 Csa-Chr2:8779877 Csa03g01103 Csa-Chr3:8719914 1.02E-51 transposed
Csa03g01103 Csa-Chr3:8719914 Csa03g02685 Csa-Chr3:25664672 1.93E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g892 Blo01g00325 Blo12g00119 . Bda08g00030 Bpe04g01065 Bpe14g00840 Bma04g01049 . Cmo08g01001 . Cma06g01246 Cma14g01889 Car06g01072 Car14g01691 Sed02g1489 Cpe08g00395 Cpe03g01588 Bhi01g00243 Tan10g0528 Cmetu06g1184 Lac12g2058 Hepe05g1754 . Lcy11g1768 . . . . . . . . . Cone7ag0385 . Lsi05g01832 Csa02g00930 . Cme06g00388 . . . Bda13g00492 Bpe05g01135 . Bma02g01208 . . Cmo06g01258 Cmo14g01940 Cma08g01029 Cma17g00108 . . Cpe12g00096 Cpe17g00248 . . . . . . . Cla05g00354 Cam05g0385 Cec05g0389 Cco05g0389 Clacu05g0380 Cmu05g0364 Cre05g0428 . Csa03g01103 Chy06g00374 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009326 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 3 1 1 1 1 1 1 1 1 4 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01103 Csa_Chr03 FPKM 4.413815 4.34152 6.419569 6.211927 14.090596 14.991504 13.01542 4.899648 5.26078 4.199401