Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01107 ATGGTTGGTTCGAGGACCACACTAAAAGAATCCAAAAGCCCACGATTCGGCCCGACGCAACCCACGTCGTTCATGTGTAGATATCGGCGATTTCCGATCCCACTCGTTTTTCGACGGTCACAGGCTTCACAGATTCTCTCCACGATGGAATTCTGCAATTCCCTCTTCTTCTTCACTCTGTTAATCATCCTCCCTCTCGCTAGGTGCGATCATACTGGCTCGGTGCTTTTCGTTGATAGCTCCTCGCACCAATATCTTCGATCTCATTCGCCTGATGATGGCTTCGAGGTCAGTTCAATGTCACTACAAGAAGTTGGTGCTGCTGTGTCAGTCTTGCTTGGTTTTGCACCGCCTTCAACGCTTTCAGCTTCTGGGTCATCTAAGCTGAATGGGATTTTGATGCCAAATCCGCTTGATAGGCCTCGTTCAGTTTTTATGCTTGAAATTAAAGGAGAATATGACCCTGAAATTGTAAGCCTGGGAACAGGCATGTCCAGCAATGTTCTTATGAGCAAGGTTCATGTAGGTCCTGAGAGTGCTGACATCCTACTTCCTGGCGAGGATGAAGTTTCTGTTGTTCCTTTGAATGAACCATTATCTGATTTTACTGATGAAGATATTAGAGAGTTTGCGTCTTTCATTGGTGGATCATATGTTGCTGATGCATCAAAAACTTTAAATGGAGAGTTTACTGTGGCTGATGCTGTTAAGATCAATCTTCATCTGTCTAAGACAGGGGACAGAGAACTTATAGGCAGTCTCTTGTCTCTCTATCACAATATTAAGAGGGCTGTGCACATTCATGAGGATTTGTCACAAAATGTGCAAAGTCCATCTGAGCTCATCACTGGCTCTTTCAATGGCATCATGGCGTTTCAAGATGAAAGTGATTCTGAAGGAGATGCTGATAATAGATCGAGACTATTTACTGTTGCTCTGTTCAAAATATTCCACTTACTCCAAAAAGCGTATGATGGTCAAATTGTTGGAGTTGTTTACTTTTCTGGATCTTCGTCACCAAAGGCAGGAGAAGGATTAACTGTGATGTTTAACCCTCGGTTGACTCCACGTTGGTTGGTGGAAGAAGCCAAAGTTAACTCGACTATTCACGAAGTGATATTGGTTAGGACAACCCTTGCCTGGATCACAGGAATCATTCTTTTGATTGCTACTCTTATGGGGTCATGCTGCCTTCTAAGGATGCCTCTGACGAGGGACACCCTCCTCTATTCTAATGTGAAATTGGACTAA 1251 43.88 MVGSRTTLKESKSPRFGPTQPTSFMCRYRRFPIPLVFRRSQASQILSTMEFCNSLFFFTLLIILPLARCDHTGSVLFVDSSSHQYLRSHSPDDGFEVSSMSLQEVGAAVSVLLGFAPPSTLSASGSSKLNGILMPNPLDRPRSVFMLEIKGEYDPEIVSLGTGMSSNVLMSKVHVGPESADILLPGEDEVSVVPLNEPLSDFTDEDIREFASFIGGSYVADASKTLNGEFTVADAVKINLHLSKTGDRELIGSLLSLYHNIKRAVHIHEDLSQNVQSPSELITGSFNGIMAFQDESDSEGDADNRSRLFTVALFKIFHLLQKAYDGQIVGVVYFSGSSSPKAGEGLTVMFNPRLTPRWLVEEAKVNSTIHEVILVRTTLAWITGIILLIATLMGSCCLLRMPLTRDTLLYSNVKLD* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8756736 8760992 + CsaV3_3G011070.1 Csa03g01107 522012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01107 416 PANTHER OS08G0567000 PROTEIN 51 416 - -
Csa03g01107 416 PANTHER OS08G0567000 PROTEIN 51 416 - -
Csa03g01107 416 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g01107 416 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01107 - - - csv:101215254 761.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g890 . . . . . . . . . . Cma06g01250 Cma14g01886 Car06g01074 Car14g01689 Sed02g1485 Cpe08g00393 Cpe03g01585 Bhi01g00041 Tan10g0534 Cmetu06g0221 . . . Lcy11g1765 . . . . . . . . Cone15ag0302 . . Lsi05g01829 . . Cme06g00391 . . . Bda13g00497 . . . . . Cmo06g01261 Cmo14g01936 . . . . . . . . . . . . . Cla05g00356 Cam05g0388 Cec05g0393 Cco05g0392 Clacu05g0383 Cmu05g0368 Cre05g0431 . Csa03g01107 Chy06g00377 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005305 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01107 Csa_Chr03 FPKM 61.585907 65.601562 63.747272 59.97097 50.494427 49.823761 52.602203 67.605476 65.969765 65.901291