Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01121 ATGGCCTCACCATCGTCTTCTTCGTCGTACTTGAATTCAACCTGTGCGCTTCTCGCTGTTCTGGATTTCGACGAGAAACACAACGAGAGCATGAAGGAGATGGACACGGAATGGATTGTGGATGTTCCTGATACACCGGATCGGTTAGCTGCCCGACAAATTAGTGGCGGACAGTTTGTTCAGACAGAGACTGGTTCTTCTTTATCTAATCGTTTGAGAAACCCTGATTTCATGATGGAAAAGGGAATAAATGGCATGAAGGGAGTGGGGGTGCTTGCCAGTGAAAATGGACATGATTCGAGACTAGATAGGAGTTCCAAAAACATTCCTTGTGAGGATTTTAAGGGTAGTAAAAACACCATTATTCTATCACCGGGAGAGAATCCTCATGCATTGCAAAACAGTCTTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATTTCAGGGGCCAAAACGTTTTATATGCCCTCGCCGTGTGGATAAAGGGATAAATATATCTGTTGACTCTCCTTCCAAACCCCCTCCTTGTCAAGAAAATACTGCAGTTCCACAAATGAGAGAACATGATCTCAAGTATAAACCTCAAACAGTTGATCGTCATGTGGCCAAGGATTTTAAGATTGAGAACACATCAAATGAACAGTCTGCAAGTTACATGCCAATTGCTTCAAAGAAACTCAACGTGAACATTAAAGGGAAGGAGAAGGTTGTTGAGGAATCATTCCAAGATGTTGGTTTATCCATGATTAATAGAGATGGAATTGAAAAATCCAATAACACCAACAATCGACATGAGAAGCAAGGTTTGGGTCCTCGTCAGTTTGTTAGTTCACCTAGAGCTACTGGACATAAAAGATTGGTACGGAATGGTTGTATCTCACCTCATAATATTGCAATAAGAGCAAAAAGTTTATCTGAGCAGTGTGAAAAGAGTTCTAGAGAAGTTGACAAGAGCAATTTGGGGAACATGCCATCAAGCAGTCCATCTTGTCCAATAGATATAAATGATATAGTTGCTGAAGACAATTTTAGTAACAAAGATAAAGGAAAAGGGATTATGCGTCAACCTTCTCTATCACATGATAAGGATGATGTCAGAGTTATTTTTTCATCTAGCAGTGACACAGGAAAGGATGTTGGAGCAAATCCAGGCAGAACTTCCAGATTAGGTACATCTGAACATTGTGAAAAAGTAGGTGTTTGGAGAAGAACACATAATCATTTGAAGAACGGGATTGTCTTGTCTAATCCATCTGGGAATTCTTTTAAGAAGATAGATAGTGTTGGAAGGCTGTCTAATGGAAAAACTGAGATTGCTATGGAGAGACAAATTCCTAGCAGGCAAGAACTCATAGCAGAAGCTGATTGTGGAGGAAGTGCTGATACGTCTCAAAGGGCTTCCCCCAAATTAGATCAGACTAATGGACCAATTCATGCGGAAAGCAAATTAAACAAAAAACAAAAGAAACATGAATCAACTTATCAAATTAATTCTTCACGCCGCATTCCAGATGTCGTGTGCCTTGGTACATCTGGGGAGTCTTCAAATTCAAGGTCAACTAGACTGAAGAGTAAAATAGTTTGTGATAATTTGAATGAAGTTATTGAGGTTGATGAGTTGTCGCCTGAAATGAGACACCCTGTCTCCCAGACTGGTGGTAGCTTAAATGATGACACCTCAGATGTTAGGGCAAGACAACTTGAAGCTGACGAGATTTTGGCTCGTGAACTTCAGGAACAACTATATCAGGAGATACCTATTGGAGGAGAAGAGATTGATGAACATTTAGCCATGGCACTGCAGCAGGTGGAACATGGCCTTCTTGCACCGTCCCGCCGGAGTCATAATAGTCAGAGGGGCTCGCTGGTAGCACAGGCCAATCGACGCACTCGTTCTCAATCTTTACAAAACCCATCCAATAGAACGCGAACTCGAGTAACCCACTCTGCACGAATGGCACAGATAAGGAATCAGTTTTTTGGTGGCTCTCATAGAGTGTCCACTAGACAAAGGAATCTTAATTTTCCTATGCATATGGATTTAGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCAGTTGGAGATATGGATGATGTCAGAATGAATAGGGACATCTTGCATATGCAGCGTGATTTCAACGAGAATGATTATGAAATGCTGCTATCCCTTGACGAGAACAATCACCGCCATGCTGGTGCATCTACTAACCGGATTAATAGTTTGCCACAATCTACTGTACAGACTGACAGCACACAAGAAGCTTGTGCAATTTGTCTGGATACGCCAACCATTGGAGATGTCATTCGCCATCTACCTTGTTTACACAAATTTCACAAAGATTGTATTGATCCATGGCTACAGAGACGAACATCGTGCCCGGTTTGTAAGTGCTCAATCACTTGA 2412 41.5 MASPSSSSSYLNSTCALLAVLDFDEKHNESMKEMDTEWIVDVPDTPDRLAARQISGGQFVQTETGSSLSNRLRNPDFMMEKGINGMKGVGVLASENGHDSRLDRSSKNIPCEDFKGSKNTIILSPGENPHALQNSLLLRKGGREKYSFQGPKRFICPRRVDKGINISVDSPSKPPPCQENTAVPQMREHDLKYKPQTVDRHVAKDFKIENTSNEQSASYMPIASKKLNVNIKGKEKVVEESFQDVGLSMINRDGIEKSNNTNNRHEKQGLGPRQFVSSPRATGHKRLVRNGCISPHNIAIRAKSLSEQCEKSSREVDKSNLGNMPSSSPSCPIDINDIVAEDNFSNKDKGKGIMRQPSLSHDKDDVRVIFSSSSDTGKDVGANPGRTSRLGTSEHCEKVGVWRRTHNHLKNGIVLSNPSGNSFKKIDSVGRLSNGKTEIAMERQIPSRQELIAEADCGGSADTSQRASPKLDQTNGPIHAESKLNKKQKKHESTYQINSSRRIPDVVCLGTSGESSNSRSTRLKSKIVCDNLNEVIEVDELSPEMRHPVSQTGGSLNDDTSDVRARQLEADEILARELQEQLYQEIPIGGEEIDEHLAMALQQVEHGLLAPSRRSHNSQRGSLVAQANRRTRSQSLQNPSNRTRTRVTHSARMAQIRNQFFGGSHRVSTRQRNLNFPMHMDLDMRLDILEALEAAVGDMDDVRMNRDILHMQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQTDSTQEACAICLDTPTIGDVIRHLPCLHKFHKDCIDPWLQRRTSCPVCKCSIT* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8844664 8851651 + CsaV3_3G011210.1 Csa03g01121 522026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01121 803 MobiDBLite consensus disorder prediction 318 332 - -
Csa03g01121 803 MobiDBLite consensus disorder prediction 253 279 - -
Csa03g01121 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 803 IPR013083 -
Csa03g01121 803 MobiDBLite consensus disorder prediction 456 498 - -
Csa03g01121 803 MobiDBLite consensus disorder prediction 482 496 - -
Csa03g01121 803 MobiDBLite consensus disorder prediction 372 390 - -
Csa03g01121 803 SMART ring_2 758 798 IPR001841 -
Csa03g01121 803 MobiDBLite consensus disorder prediction 612 645 - -
Csa03g01121 803 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 333 801 - -
Csa03g01121 803 SUPERFAMILY RING/U-box 753 802 - -
Csa03g01121 803 PANTHER - 333 801 - -
Csa03g01121 803 MobiDBLite consensus disorder prediction 310 332 - -
Csa03g01121 803 Pfam Ring finger domain 757 799 IPR001841 -
Csa03g01121 803 MobiDBLite consensus disorder prediction 611 645 - -
Csa03g01121 803 MobiDBLite consensus disorder prediction 372 391 - -
Csa03g01121 803 CDD RING-H2_PA-TM-RING 758 799 - -
Csa03g01121 803 ProSiteProfiles Zinc finger RING-type profile. 758 799 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01121 - - - csv:101205482 1606.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00256 Csa-Chr2:1740088 Csa03g01121 Csa-Chr3:8844664 8.90E-12 dispersed
Csa03g01121 Csa-Chr3:8844664 Csa06g00126 Csa-Chr6:830311 4.08E-16 dispersed
Csa03g01121 Csa-Chr3:8844664 Csa05g02459 Csa-Chr5:26440115 1.39E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g856 . . . . . Bpe14g01298 . . . . . Cma14g01878 . Car14g01680 . Cpe08g00384 Cpe03g01575 . . . . . . . . . . . . . . Cone14ag0212 Cone15ag0233 . . Lsi05g01818 . . . . . . . . . . . . . Cmo14g01926 . . . . . . . . . . . . . . . . . . . . . Csa03g01121 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01121 Csa_Chr03 FPKM 404.773132 436.436554 390.764618 390.589294 78.177231 71.714981 67.450089 146.134964 155.499725 139.407471