Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01125 ATGGCTAGGGAAGTACATGGCGTTTTAAGCCAACAATTATACATGGAAAGACCAAGTGTTGTTTCGGATGTACGGATTACTGCGGATCATAGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCACAGTTTATGCGAGATCGTGTTGCGTTAAGAAGATTTTCTGACATGAGTGATGGAGATCAACAACAACAGCAGCAAAAGAGAAAAGGTTTTGGGTTCAATCCGAGCAACCAATTGGTGTATGAGGATCTTAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGTAGTTCAGAAATGTCATCAACGCCAATGACTGCTTATGCAGCTGAAAAGGACAACAAGGTTTATCCTAATACCACAAGCAAATGTCAGTGGGAATATAACAATGGTACTGGACAAGCATCTGCCGCATATGCCGACGAAACTAATCGAGGAGTTCAAATTGGCCCCATGATGTCGGCCTTGTATCCATTGGATTCGCCTCATTCATGTTATCCTTGTGGGGCTGGATTTGGAGATTTCTCTGCCAATGACAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCGAGGCCTAATGATGGGAAGCTTAGATATGTAGCGGGAGAAACGCGCATCATATCCATTAGGAAAAACATCTCATATGAAGAACTTACCAAAAAGACATACGCTGTCTGTAAATATGCCCACACAATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATCTCTGTCTGCTCTGATGAGGATCTTCATCATATGATAGAGGAATATCAGGAGCTGGAAAACGCAGAAGGTTCTCAGAGACTTAGAATTTTTCTTATTTCTTCGAATGATTGTAGTGAGAGTCCTACTTCTATTGAAGGAAGGGTAGTTCCACCAATTGATGTGGATTATCAATATGTTGCGGCTGTGAACGGTATTCTAGACCCGAGTCTTCAAAGGAGCTCCAGTGGGCAGAGTTTCACAAGCCAGAATAGCCAGGTGGGAGCCATCTCAGATCATAGTCCCAATTTTCGTACTGATTCGTCACATGCTACAGACGTGAAAGATGTCAGTTCACTAATGCCAAATTTGATGGGAATGTTACCTAGACCAGGTGGTCAATTGTTAAACCCCATCCAAGTCCCACGCAAGTCATTAAATCAATCACCTTTAATTTCTCCGGTTACTGTAATGCAAAAAGATTTTAGGAACGTGGATGCAACATATGCAGAAGACGCTAGAAACTTCTCTCCAATTGTTTCAGGAAAACATCCATGTGATTCAGTTTATTATGTTGATGCAATGGGCCGTCACAATTATCTTTACCATGGTTCTCCGTTGATGAATTATTATCATGAAAAATCTACTGCGGAAACTGATGAGACATACAAAGTTCTTAATGTTCATTTCCCACGAAGCTCCAGTGAGGATTTTGTTCCTGCACCCATCTGGGGTCTAAGTGATACACATCCAATGAAAACTATGCTGAAGGAACGGGCAGTTAATTATGAACAACTATGCTCTGACGCGGAGTATTTGATGCAGCTAAGATCTGGAACCACCCATATGGGACAAAGAATTATCCATTCGCATTCTGAGCCCCTACTGCTGGAGCAGGATCAAAAGCCGAATCATGGAGGGCCCTATCCACTAACCTCATTCAATGATAGTGATCAGTCACCTTCACTTGCAATGTCAAGTTCCTTGCAGGATTTGCCAACGTTGTGGAAACAGAGAGATGGCGTGGAATTTCAATATGCTAAATATGAGAATCATCGAAAGTTGGCATCTGGTAGTGATAATGAAACATATGAAGAATGCAATTTTGATGGAAAGAAGAATAATTTCAATGGAATTATTTATGCTCCATCACTTAATGATGAAGAAAAATACAGATATTTGCAACATGCTGGCTACCGACAAAATGGTTGCCCCCCCAAAGAGGTTCAAAACCTTAGAGGTAGATCTTCTGCTGAACGAGGTATTGAATTAGAAAATTCTGCAGATACCACGGGTGCCCCTTCCCTCGTTTACCATTTTGAAAGAACTGCTCCAAAAGATTTCGAGGAGAGCCAATATTCTACCAAGGATCAACCAACTACTTCTGATATAGTAAGGAGCCAGCCACTATCGTGCACTTCTTCCGATCTACTACCTCATACAATTCAAGCTTTCGACGATGTAAAGATCATTAATCAGAAACCAACATGGGATAGTTCTGCTTCAGGTATAGAGATTTCTCTAGGCGATGAGAACTTTGTAACCTGTCATTACTGCAAGGTTGCAGCCCATAGCAGAAGAAAGAGCAACTGTGATGATGCTATATCACACTCAGATGATTCTCATGGCAATGAGGATGAGGATTTAGCTGTAATAGTTGAAGATGTAACTCATAGTCTGCCTCCTGACATACCCTTGGCTTCAGGAATTGTCCCGCGGGTTGAAAATGAGGCCAGCGATGAATTTCCATCTTCAAGAGGAAATGATGCTCTGAGTTCTAGTTCAGAAACTGACCATGAGGATGCCGACAGTATTCTTAGTTCAAGGGACGAGTCTATGAGTGAGGCAGCAATAGCTGAAATCGAAGCTGGCATCTATGGCCTGCAGATAATAAAGGATGCAGATCTTGAAGAATTGCAAGAGTTGGGATCTGGGACATTTGGTACCGTTTTTCATGGAAAATGGAGGGGAACAGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGCAGTTTTTCAGAGCAAGAACGACTGACTAGAGATTTCTGGAGGGAAGCAAGGATTCTATCGACCCTTCACCATCCAAACGTTTTGGCTTTTTATGGGGTGGTTCCTGATGGACCTGATGGAACATTGGCAACTGTAACCGAGTACATGGTAAACGGTTCGTTAAGGCATGTCCTTCTAAGGAAAGATAAAGTGCTTGATCGTCGGAAAAGGCTTATAATTGCAATGGATGCGGCTTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATCTGAAATGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCTATATGCAAGGTTGGAGATTTTGGGTTGTCAAGAATTAAACGCAATACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGACAGTACCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAACATGCATTGTGGTGCCATCATCGGTGGAATTGTAAGTAATACTCTTAGACCGCCAATTCCGAAACGCTGCGATCCCGAATGGAAAAAGCTAATGGAAGAGTGTTGGTCTCCTGAACCTGCAGCAAGACCATCATTCACAGAGATAACAAATAGACTTCGCAGCATGTCGGTAGCGCTTCAGATCAGAAAGAGGCCAAATGTAGCAAGTAGATGA 3489 41.96 MAREVHGVLSQQLYMERPSVVSDVRITADHSVSDVCVQTGEVFSPQFMRDRVALRRFSDMSDGDQQQQQQKRKGFGFNPSNQLVYEDLSGILGLKRMNSESSSEMSSTPMTAYAAEKDNKVYPNTTSKCQWEYNNGTGQASAAYADETNRGVQIGPMMSALYPLDSPHSCYPCGAGFGDFSANDKMKFLCSFGGRILPRPNDGKLRYVAGETRIISIRKNISYEELTKKTYAVCKYAHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYQELENAEGSQRLRIFLISSNDCSESPTSIEGRVVPPIDVDYQYVAAVNGILDPSLQRSSSGQSFTSQNSQVGAISDHSPNFRTDSSHATDVKDVSSLMPNLMGMLPRPGGQLLNPIQVPRKSLNQSPLISPVTVMQKDFRNVDATYAEDARNFSPIVSGKHPCDSVYYVDAMGRHNYLYHGSPLMNYYHEKSTAETDETYKVLNVHFPRSSSEDFVPAPIWGLSDTHPMKTMLKERAVNYEQLCSDAEYLMQLRSGTTHMGQRIIHSHSEPLLLEQDQKPNHGGPYPLTSFNDSDQSPSLAMSSSLQDLPTLWKQRDGVEFQYAKYENHRKLASGSDNETYEECNFDGKKNNFNGIIYAPSLNDEEKYRYLQHAGYRQNGCPPKEVQNLRGRSSAERGIELENSADTTGAPSLVYHFERTAPKDFEESQYSTKDQPTTSDIVRSQPLSCTSSDLLPHTIQAFDDVKIINQKPTWDSSASGIEISLGDENFVTCHYCKVAAHSRRKSNCDDAISHSDDSHGNEDEDLAVIVEDVTHSLPPDIPLASGIVPRVENEASDEFPSSRGNDALSSSSETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKDADLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDKVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSTSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDPEWKKLMEECWSPEPAARPSFTEITNRLRSMSVALQIRKRPNVASR* 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8860576 8866942 - CsaV3_3G011250.1 Csa03g01125 522030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01125 1162 MobiDBLite consensus disorder prediction 838 853 - -
Csa03g01125 1162 SUPERFAMILY CAD & PB1 domains 201 291 - -
Csa03g01125 1162 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 104 441 - -
Csa03g01125 1162 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 773 1156 - -
Csa03g01125 1162 MobiDBLite consensus disorder prediction 699 713 - -
Csa03g01125 1162 SUPERFAMILY Protein kinase-like (PK-like) 873 1143 IPR011009 -
Csa03g01125 1162 SMART PB1_new 200 287 IPR000270 GO:0005515
Csa03g01125 1162 MobiDBLite consensus disorder prediction 324 356 - -
Csa03g01125 1162 Gene3D - 204 288 - -
Csa03g01125 1162 MobiDBLite consensus disorder prediction 551 570 - -
Csa03g01125 1162 MobiDBLite consensus disorder prediction 821 854 - -
Csa03g01125 1162 Gene3D Phosphorylase Kinase; domain 1 874 968 - -
Csa03g01125 1162 Gene3D Transferase(Phosphotransferase) domain 1 969 1160 - -
Csa03g01125 1162 CDD PB1_UP2 189 285 - -
Csa03g01125 1162 CDD STKc_MAP3K-like 887 1144 - -
Csa03g01125 1162 Pfam PB1 domain 201 284 IPR000270 GO:0005515
Csa03g01125 1162 MobiDBLite consensus disorder prediction 60 80 - -
Csa03g01125 1162 SMART serkin_6 881 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01125 1162 MobiDBLite consensus disorder prediction 59 80 - -
Csa03g01125 1162 MobiDBLite consensus disorder prediction 692 713 - -
Csa03g01125 1162 Pfam Protein tyrosine and serine/threonine kinase 883 1144 IPR001245 GO:0004672|GO:0006468
Csa03g01125 1162 ProSitePatterns Protein kinases ATP-binding region signature. 887 912 IPR017441 GO:0005524
Csa03g01125 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1006 1018 IPR008271 GO:0004672|GO:0006468
Csa03g01125 1162 ProSiteProfiles Protein kinase domain profile. 881 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01125 1162 MobiDBLite consensus disorder prediction 543 570 - -
Csa03g01125 1162 PRINTS Tyrosine kinase catalytic domain signature 963 976 IPR001245 GO:0004672|GO:0006468
Csa03g01125 1162 PRINTS Tyrosine kinase catalytic domain signature 1000 1018 IPR001245 GO:0004672|GO:0006468
Csa03g01125 1162 PRINTS Tyrosine kinase catalytic domain signature 1071 1093 IPR001245 GO:0004672|GO:0006468
Csa03g01125 1162 PRINTS Tyrosine kinase catalytic domain signature 1115 1137 IPR001245 GO:0004672|GO:0006468
Csa03g01125 1162 PANTHER SERINE-THREONINE PROTEIN KINASE 773 1156 - -
Csa03g01125 1162 PANTHER SERINE-THREONINE PROTEIN KINASE 104 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01125 - - - csv:101205945 2298.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01842 Csa-Chr1:15509686 Csa03g01125 Csa-Chr3:8860576 7.22E-32 dispersed
Csa02g00595 Csa-Chr2:4303471 Csa03g01125 Csa-Chr3:8860576 9.19E-29 dispersed
Csa02g01774 Csa-Chr2:17226882 Csa03g01125 Csa-Chr3:8860576 6.25E-30 dispersed
Csa03g00645 Csa-Chr3:5612890 Csa03g01125 Csa-Chr3:8860576 4.41E-36 dispersed
Csa03g01125 Csa-Chr3:8860576 Csa06g01155 Csa-Chr6:9630287 1.90E-46 dispersed
Csa03g01125 Csa-Chr3:8860576 Csa06g02656 Csa-Chr6:23385603 1.91E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77974 PF07714 PK_Tyr_Ser-Thr 1.00E-61 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01125 Csa_Chr03 FPKM 1.366009 1.607282 0.996313 1.156479 6.773239 7.304773 8.67308 1.036457 1.145775 1.433215