Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01127 ATGAAATGGATGTGTTCTGTCACTTTTTTGCTCATAATTGGCTTGATTGTGGCCGATGATCGACCGATCCCCACCACTCTCGATGGCCCATTTCTCCCCGTTACTCGTTGGTTTGATCCGTCTTTGAGGCGTGGAAGCGATGATTTACCCATGGATCATCCAAGGCTTCGAAAGAAAGTTTCATCAAACTTTCCTGAACAGATATCGCTTGCGATTTCCACTCCTACCTCCATGTGGGTCTCTTGGGTTACGGGGGATGCTCAGATTGGCAAACATGTGACTGCACTGGATCCATCTTCTGTTGCTAGTGAGGTTTGGTATGGAAAAGTAAGCGGAAAGTACACGAATATGAGAAGAGGGGTTTCGACTGTTTACAGTCAGCTATATCCATTTGAAGGACTGCTTAATTACACCTCTGGCATTGTTCACCATGTCAGAATCGATGGTCTCGAACCTGAAACCAAGTATTATTATCAGTGTGGAGATAGCTCTATTCCAGCTTTGAGTAAAGAACACATGTTCGAGACTTTACCATTGCCAAGCAAAAGTTCATATCCTCGTAAAATAGCCATTGTTGGAGACTTGGGACTTACGAGCAATTCAACAACAACAATTGATCATCTAGTTGAGAATGATCCTTCTCTGATCTTGATGATAGGAGATTTAGTTTATGCGAATCAATACCTCACAACCGGTGGCAAAGGAGCTTCATGTTTTTCATGTGCATTTCCAGATGCTCCCATTAGGGAGACATATCAACCCCGTTGGGATGCGTGGGGCAGGTTTATGGAGCCAGTAATCTCACGAGTTCCAATGATGGTTATCGAGGGTAACCATGAGATTGAGCCCCAAATATCTGGGATCACTTTCAAATCATATTTGACAAGATTTGCAGTGCCCTCTGCTGAGAGTGGCTCGAAGAGTAGCTTCTACTACTCATTCAATGCTGGAGGAATTCATTTTCTTATGTTGGGAGCATATATCGATTACAATGCTACCGGTGCTCAGTTTGCTTGGCTGAAAGAAGATTTGGATAAAATAGACCGTACGGTGACCCCTTGGTTAGTAGCTGCCTGGCATCCTCCATGGTACAATAGCTATTCTTCTCATTACCAAGAATTTGAATGCATGCGCCAAGAGATGGAACACCTTCTTTACGAGCATGGTGTTGATATTGTTTTTTCTGGCCATGTACATGCCTATGAACGTATGAACAGAGTATACAACTATACACTGGATCCTTGTGGCCCCGTTTACATAACAGTTGGAGATGGTGGAAACATTGAGAAGGTTGATGTGGATCATGCTGATGACCCTGGAAAATGTCCTTCAGCTCGTGATAATATTCCAGAATTTGGAGGAGTGTGTCGTTTGAACTATTCTTCTGGTCCAGCTGAAGGAAAGTTTTGTTGGAACACCCAACCTGAATGGAGTGCATTTAGAGAAAGCAGCTTTGGTCATGGAACGCTTGAGGTAAAAAATTCAACTCATGCTTTGTGGACTTGGCACCGGAATCAAGATGTGTACAAGAAAGAAAACCATGGAGATCGAATATACATTGTTCGACAACCTGATTTGTGCCTTCCGACGACCAAGTTGAATCCTTCATTACTCCCTCGATGGGTGCTTCCACATTCTACAGCACGTAGCTACTAG 1656 43.6 MKWMCSVTFLLIIGLIVADDRPIPTTLDGPFLPVTRWFDPSLRRGSDDLPMDHPRLRKKVSSNFPEQISLAISTPTSMWVSWVTGDAQIGKHVTALDPSSVASEVWYGKVSGKYTNMRRGVSTVYSQLYPFEGLLNYTSGIVHHVRIDGLEPETKYYYQCGDSSIPALSKEHMFETLPLPSKSSYPRKIAIVGDLGLTSNSTTTIDHLVENDPSLILMIGDLVYANQYLTTGGKGASCFSCAFPDAPIRETYQPRWDAWGRFMEPVISRVPMMVIEGNHEIEPQISGITFKSYLTRFAVPSAESGSKSSFYYSFNAGGIHFLMLGAYIDYNATGAQFAWLKEDLDKIDRTVTPWLVAAWHPPWYNSYSSHYQEFECMRQEMEHLLYEHGVDIVFSGHVHAYERMNRVYNYTLDPCGPVYITVGDGGNIEKVDVDHADDPGKCPSARDNIPEFGGVCRLNYSSGPAEGKFCWNTQPEWSAFRESSFGHGTLEVKNSTHALWTWHRNQDVYKKENHGDRIYIVRQPDLCLPTTKLNPSLLPRWVLPHSTARSY* 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8873742 8879813 - CsaV3_3G011270.1 Csa03g01127 522032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01127 551 CDD MPP_PAPs 183 522 IPR041792 -
Csa03g01127 551 Gene3D - 183 528 IPR029052 -
Csa03g01127 551 SUPERFAMILY Metallo-dependent phosphatases 187 507 IPR029052 -
Csa03g01127 551 Gene3D - 64 179 - -
Csa03g01127 551 PANTHER PURPLE ACID PHOSPHATASE 23 14 530 - -
Csa03g01127 551 Pfam Iron/zinc purple acid phosphatase-like protein C 466 507 IPR025733 -
Csa03g01127 551 Pfam Calcineurin-like phosphoesterase 188 401 IPR004843 GO:0016787
Csa03g01127 551 SUPERFAMILY Purple acid phosphatase, N-terminal domain 47 178 IPR008963 GO:0003993|GO:0046872
Csa03g01127 551 Pfam Purple acid Phosphatase, N-terminal domain 65 176 IPR015914 GO:0003993|GO:0046872
Csa03g01127 551 PANTHER ACID PHOSPHATASE RELATED 14 530 IPR039331 GO:0003993
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01127 K22390 ACP7; acid phosphatase type 7 - csv:101206188 1165.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g00942 Csa03g01127 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00942 Csa-Chr2:8886082 Csa03g01127 Csa-Chr3:8873742 0 dispersed
Csa03g01127 Csa-Chr3:8873742 Csa06g02677 Csa-Chr6:23529181 8.05E-93 dispersed
Csa03g01127 Csa-Chr3:8873742 Csa07g00018 Csa-Chr7:338015 6.27E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g848 . . . . . . . . . . . Cma14g01873 . Car14g01675 Sed12g0408 . Cpe03g01571 Bhi01g00061 Tan10g0557 Cmetu06g2760 . . . Lcy11g1746 . . . . . . . . . . Cone4ag0384 Lsi05g01814 Csa02g00942 . Cme06g00409 . Blo07g00296 Bda11g00659 . . . . Bma06g01625 . . Cmo14g01919 . . . . . . . . . . . . . Cla05g00371 Cam05g0404 Cec05g0409 Cco05g0409 Clacu05g0399 Cmu05g0384 Cre05g0446 . Csa03g01127 Chy06g00394 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009299 0 5 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01127 Csa_Chr03 FPKM 8.5 14.730861 12.85133 15.687603 8.687051 5.620717 7.041079 7.230773 8.392849 7.838583