Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01128 | ATGGCAATGGCGGAATCTGGTAAATGGATTCGTTTGATTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAGCAATTGCTAGAGCTCCCAAAGAGATTCCTGAAATTGAGAATGGAGGAACTGAGAAGCTGCAGAGCTCAAGCAACTCAACGATGGCGGTGAGGTTGGATGAGGCTAAGGATCTCGGTAATGAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCTACTGCGAGGAGGGAGCTCGGTTTCTTCTCTTGTGGAACCGGCAATCCTATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAATCGCAAACGTCTCGCAGATTGTGGCATTGGCTTTGGCCGAAACGCCATCGGAGGCCGTGACGGTCGATTTTATGTTGTCACTGACTCCGGCGACGACAACCCTGTCAACCCAAAGCCTGGTACTTTGCGACATGCCGTCATCCAGGACGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGAAGCTCACCCAATCACGTGGGGTGGAGAACAATAGCTGATGGTGATGCCATTTCAATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGCGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCTCCAACAATTACTTCACCCACCACAACGAGGTTATGTTATTAGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCACTTTGGTGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGTCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCAAAAGAGGTAACAAAGAGAGTTGAGACATCTGAAAGTGAGTGGAAAGGTTGGAATTGGAGATCAGAAGGAGACCTTTTGTTGAACGGAGCCTTTTTCATTCCATCTGGTGCGGGGGCCTCATCAAGTTATGCTAGAGCTTCAAGCTTGGGAGCTAAATCTTCATCCATGGTTGGTACTATAACATCCAATGCCGGTGCGCTTTCCTGCCGAAGAGGCCACGCGTGCTAG | 1344 | 46.88 | MAMAESGKWIRLILLVVFMLFVGAIARAPKEIPEIENGGTEKLQSSSNSTMAVRLDEAKDLGNEHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETSESEWKGWNWRSEGDLLLNGAFFIPSGAGASSSYARASSLGAKSSSMVGTITSNAGALSCRRGHAC* | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8895882 | 8901195 | + | CsaV3_3G011280.1 | Csa03g01128 | 522033 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01128 | 447 | SUPERFAMILY | Pectin lyase-like | 75 | 442 | IPR011050 | - | |
Csa03g01128 | 447 | PANTHER | PECTATE LYASE 18-RELATED | 14 | 444 | IPR045032 | GO:0030570 | |
Csa03g01128 | 447 | Gene3D | - | 98 | 440 | IPR012334 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 121 | 138 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 145 | 170 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 181 | 197 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 245 | 266 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 325 | 344 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 347 | 366 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 389 | 413 | IPR018082 | - | |
Csa03g01128 | 447 | PRINTS | Pollen allergen Amb family signature | 418 | 441 | IPR018082 | - | |
Csa03g01128 | 447 | Pfam | Pectate lyase | 184 | 362 | IPR002022 | - | |
Csa03g01128 | 447 | PANTHER | PECTATE LYASE | 14 | 444 | - | - | |
Csa03g01128 | 447 | SMART | amb_all | 173 | 370 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01684 | Csa-Chr2:16049973 | Csa03g01128 | Csa-Chr3:8895882 | 0 | dispersed | |
Csa03g01128 | Csa-Chr3:8895882 | Csa05g01868 | Csa-Chr5:21944533 | 0 | dispersed | |
Csa02g00989 | Csa-Chr2:9495612 | Csa03g01128 | Csa-Chr3:8895882 | 0 | wgd | |
Csa03g01128 | Csa-Chr3:8895882 | Csa03g02663 | Csa-Chr3:25266042 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01128 | K01728 | - | csv:101218188 | 912.524 |