Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01129 ATGGCGACAAGAATTGGATTGGTGCTTCCTCAGCCGGTGACGTTTGTGACCGGGAACGTCAAGAAGCTTGAGGAAGTTCGAGCAATATTGGGCAACTCCATTCCTTTTCGTTCTCTCAAGCTTGACTTGCCGGAGTTGCAAGGCGAACCAGAAGATATATCGAAAGAGAAGGCTCGGTTGGCTGCTATCAAGGTTAATGGGCCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTCCCTGGGCCATACATCAAATGGTTCTTGGAGAAGATCGGCCACGAAGGTCTGAACAATTTGTTGATGGCATACGAGGACAAGTCAGCATATGCTTCATGCATCTTTTCATTTTCTCTTGGGCCTGAATCTGAACCGATCACATTTGTGGGAAAAACTCCGGGAAAAATTGTTCTTCCGAGAGGCCCTAATGATTTTGGTTGGGATCCAATTTTTCAACCTGATGGCTTTGACCAAACGTATGCTGAAATGTGCAAGGAAGAAAAGAACAAGATATCTCATCGCTATCGTGCTCTTGCGCTGGTGAAATCTCACTTTGCTGAAGCTAATTACACAAGCCCGATCCAAGACTAA 603 46.1 MATRIGLVLPQPVTFVTGNVKKLEEVRAILGNSIPFRSLKLDLPELQGEPEDISKEKARLAAIKVNGPVLVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLLMAYEDKSAYASCIFSFSLGPESEPITFVGKTPGKIVLPRGPNDFGWDPIFQPDGFDQTYAEMCKEEKNKISHRYRALALVKSHFAEANYTSPIQD* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8902467 8907559 - CsaV3_3G011290.1 Csa03g01129 522034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01129 200 TIGRFAM TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 13 188 IPR002637 GO:0009143|GO:0047429
Csa03g01129 200 CDD HAM1 13 188 IPR002637 GO:0009143|GO:0047429
Csa03g01129 200 Hamap Inosine triphosphate pyrophosphatase [ITPA]. 11 191 IPR027502 GO:0009143|GO:0047429
Csa03g01129 200 SUPERFAMILY ITPase-like 11 191 IPR029001 -
Csa03g01129 200 PANTHER INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN 13 195 IPR002637 GO:0009143|GO:0047429
Csa03g01129 200 Gene3D - 7 192 IPR029001 -
Csa03g01129 200 Pfam Ham1 family 13 186 IPR002637 GO:0009143|GO:0047429
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01129 K01519 rdgB, ITPA; XTP/dITP diphosphohydrolase [EC:3.6.1.66] - csv:101218429 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01129 Csa-Chr3:8902467 Csa06g01616 Csa-Chr6:13945034 8.95E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g843 . . . . . . . . . . . Cma14g01871 . Car14g01673 . . Cpe03g01569 Bhi01g00003 . . . . . . . . . . . . . Cone14ag0209 Cone15ag0230 . . Lsi05g01811 . . Cme06g00411 . Blo07g00295 Bda11g00658 . . Bpe13g00533 . Bma06g01624 . . Cmo14g01917 . . . . . . . . . . . . . Cla05g00373 Cam05g0406 Cec05g0411 Cco05g0411 Clacu05g0401 Cmu05g0386 Cre05g0448 . Csa03g01129 Chy06g00396 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007514 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01129 Csa_Chr03 FPKM 0.852101 0.517471 0.519642 0.515243 0.255034 0.089783 0.210116 1.252384 0.871957 1.116569