Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01130 ATGCAAATGTCGTCGATGCCTTATTCGAGACAATATTTCTCCATCTCATTCTTCTTCTTCTTCTTCTCATTTTTCTCTGTTCTTCATTGTGTTTCTTATGTCTATGCTTCTAATGGCGAAGCCGCTATGTTATTTTCATGGCTTCGAAGTTCTGGTAGTGGTTCTCATTTCTCCGATTGGAATGCTCTTGACGCTAGTCCATGTAACTGGACCTCCATTTCTTGCTCCCCTCATGGGTTTGTTACTGACATTAGTATTCAGTTTGTTCCTCTTCGGCTTCCTCTGCCTTCGAATCTCTCTTCGTTTCGGTTTCTTCAGAAGCTTGTTGTCTCCGGTGCTAATGTTACCGGAAAAATCCCCGACGACATCGGGAACTGTACGGAACTTGTAGTTCTTGACTTGAGCTTCAATAATCTCGTGGGGTCTATTCCCGGAAGTATTGGGAATCTCCGGAAGTTAGAGGACTTGATTTTGAATGGAAACCAGTTGACGGGGAGTATTCCGGCGGAGTTGGGGTTTTGTTCTAGCCTAAAGAATCTCTTCATTTTTGATAATTTACTATCTGGGTTTTTGCCGCCGGACATTGGAAAATTGGAAAATCTCGAAGTTCTTCGAGCGGGAGGTAACAAAGAAATCACGGGAGAAATCCCACCGGAGTTTGGAAACTGCAGTAAACTGGCATTGTTAGGATTGGCCGATACTCGGATTTCCGGCCGGTTACCGTCGTCTCTGGGAAAGCTTAAGAACCTTCGGACATTGTCGATTTACACAACTTTGCTCTCCGGTGAAATTCCATCTGATTTAGGTAACTGTTCCGAGCTTGTTGATTTGTATCTTTATGAAAATCGTCTCTCAGGTTCGATTCCACCACAGATAGGAGACCTTAAAAAACTTGAACAATTGTTCTTATGGCAGAACAATCTAATTGGGGCAATCCCAAAGGAGATTGGTAACTGTAGCAGTTTAAGAAGAATTGATTTCTCTTTGAATTATCTGTCTGGGACTTTACCTTTAACGTTAGGGAAACTTTCAAAGCTAGAAGAGTTTATGATTAGTGATAACAATGTCTCTGGTTCAATTCCTTCTAGTCTTTCAGATGCCAAGAATTTATTGCAGTTGCAATTTGATAACAATCAGATTTCTGGGTTGATTCCACCAGAGCTTGGAACCTTATCAAAGCTTACTGTGTTGTTGGCATGGCAGAACCAACTTGAAGGAAGCATTCCTGAAAGTTTAGAAGGGTGTAGTAGTCTTGAAGCTATTGATTTGTCTCACAACTCACTTACTGGTGTTATTCCTTCTGGATTGTTTCAGCTTCGTAATCTTTCAAAACTTCTGTTGATTTCCAATGATATATCTGGTCCAATCCCTCCCGAAATCGGTAACGGCAGCTCACTTGTGCGGTTGCGGCTTGGAAACAACCGGATAACAGGTGGGATTCCTAGAACAATTGGCAGGTTGAGTAGTTTAGACTTTCTTGATCTCTCTGGGAATCGTATTTCTGGTCCATTGCCTGATGAGATTGGGAATTGCAAAGAGTTGCAGATGATAGATTTGAGCTATAATGCTTTAGAAGGTCCTTTGCCTAACTCATTGGCTTCTTTGTCTGAGCTTCAGGTCTTCGACGTTTCATCTAACCGATTTTTAGGGGAGCTTCCGGGGAGCTTTGGGAGTCTTGTTTCGTTAAATAAGCTTGTTTTGAGAGCAAACTTGTTATCGGGATCAATACCACCATCACTTGGTCTATGTTCAGGTTTGCAACGACTCGATCTTAGTAACAACCATTTTACTGGCAATATTCCAGTGGAGCTTGGACAGCTTGATGGTCTTGAAATTGCTCTCAACCTCAGCAACAATGAGCTTTATGGACCAATCCCACCTCAAATGTCTGCACTTACTAAGCTTTCGGTACTTGATCTTTCCCGAAACAACCTCGAGGGTGACTTGAAACCACTTGCAGGGCTGAGTAATCTGGTCTCTCTCAACATCTCTTACAATAATTTCAGTGGTTATCTTCCTGACAACAAGCTTTTCAGGCAGCTATCACCAACGGACCTGACTGGCAACGAAAGGCTATGTTCTTCGATCAGGGACTCATGTTTTTCTATGGATGGATCAGGACTAACAAGGAATGGAAACAATGTGAGATTATCACATAAGCTTAAGCTAGCAATTGCCTTGCTTGTTGCTTTAACATTTGTCATGATGATCATGGGGATTATTGCTGTGGTTAGAGCAAGAAGAAACATAATTGATGATGATGATTCAGAGTTAGGGGACAAATGGCCTTGGCAATTCACACCATTCCAGAAACTAAATTTCTCTGTGGACCAAGTGTTAAGAAGCCTCATTGATTCAAATGTGATTGGAAAAGGATGCTCTGGGGTTGTCTATCGTGCTGATATCGGTAATGGCGAGACCATTGCAGTAAAGAAACTTTGGCCAACAATATCAGCTGCTGCTGATGGGTATACTGATGAAAAACCGAGGGTTCGCGATTCCTTCTCGACGGAGGTGAAAACTTTAGGCTTGATTCGTCATAAGAACATTGTTAGATTCTTGGGTTGTTGTTGGAATAAAAACACAAGGTTGCTCATGTATGATTACATGCCCAATGGGAGTTTGGGAAGCCTTCTTCATGAAAGGGGAGGGAAAAATGATGCATTGGATTGGGGACTTAGGTACAAAATTTTGCTTGGTGCAGCACAGGGGCTTGCTTACTTGCACCATGACTGTGTCCCTGCTATTGTTCATAGGGACATCAAGGCCAATAACATTCTGGTTGGCCTAGATTTTGAGCCTTACATTGCTGATTTCGGCCTCGCCAAGCTTGTCGATGAAGGCAATTTTGGTCGGTCCTCCAACACTGTCGCTGGTTCTTATGGCTACATTGCTCCCGAATACGGATACATGATGAAGATCACAGAAAAGAGCGATGTTTACAGCTTTGGCGTAGTAGTATTAGAAGTCTTAACAGGGAAGCAACCAATTGATCCAACAATACCAGGAGGGCTACATGTGGTTGATTGGGTGAGACAAAAGAAAGGAGTGGGGGTTCTAGACTCAGCTCTTCTGTCTAGGCCAGAGTCAGAGATAGAGGAAATGATGCAAGTTTTAGGCATAGCATTGCTGTGTGTGAACTTCTCCCCGGACGAGCGCCCGAATATGAAAGATGTCGCTGCCATGCTCAAAGAAATAAAGCAAGAAACCGACTCGAAGATTGACGTGTTCGTTGAAGGAGGGTGCGATGGTCAAGAAAATAAGAGGCCAAGGGGGGTGTTGGCAATGGCAACAGCTTCATCTTCTGCTAATAAACTGGGAATAGAAAGTGTTTGTGTTAAAAGTGATGGTTTCAGCCTCACTTCTTCCTCACTGCTTCACCCATCTTCCTCTACTGCCAAAATGGGAGCCAAATGA 3417 43.02 MQMSSMPYSRQYFSISFFFFFFSFFSVLHCVSYVYASNGEAAMLFSWLRSSGSGSHFSDWNALDASPCNWTSISCSPHGFVTDISIQFVPLRLPLPSNLSSFRFLQKLVVSGANVTGKIPDDIGNCTELVVLDLSFNNLVGSIPGSIGNLRKLEDLILNGNQLTGSIPAELGFCSSLKNLFIFDNLLSGFLPPDIGKLENLEVLRAGGNKEITGEIPPEFGNCSKLALLGLADTRISGRLPSSLGKLKNLRTLSIYTTLLSGEIPSDLGNCSELVDLYLYENRLSGSIPPQIGDLKKLEQLFLWQNNLIGAIPKEIGNCSSLRRIDFSLNYLSGTLPLTLGKLSKLEEFMISDNNVSGSIPSSLSDAKNLLQLQFDNNQISGLIPPELGTLSKLTVLLAWQNQLEGSIPESLEGCSSLEAIDLSHNSLTGVIPSGLFQLRNLSKLLLISNDISGPIPPEIGNGSSLVRLRLGNNRITGGIPRTIGRLSSLDFLDLSGNRISGPLPDEIGNCKELQMIDLSYNALEGPLPNSLASLSELQVFDVSSNRFLGELPGSFGSLVSLNKLVLRANLLSGSIPPSLGLCSGLQRLDLSNNHFTGNIPVELGQLDGLEIALNLSNNELYGPIPPQMSALTKLSVLDLSRNNLEGDLKPLAGLSNLVSLNISYNNFSGYLPDNKLFRQLSPTDLTGNERLCSSIRDSCFSMDGSGLTRNGNNVRLSHKLKLAIALLVALTFVMMIMGIIAVVRARRNIIDDDDSELGDKWPWQFTPFQKLNFSVDQVLRSLIDSNVIGKGCSGVVYRADIGNGETIAVKKLWPTISAAADGYTDEKPRVRDSFSTEVKTLGLIRHKNIVRFLGCCWNKNTRLLMYDYMPNGSLGSLLHERGGKNDALDWGLRYKILLGAAQGLAYLHHDCVPAIVHRDIKANNILVGLDFEPYIADFGLAKLVDEGNFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSFGVVVLEVLTGKQPIDPTIPGGLHVVDWVRQKKGVGVLDSALLSRPESEIEEMMQVLGIALLCVNFSPDERPNMKDVAAMLKEIKQETDSKIDVFVEGGCDGQENKRPRGVLAMATASSSANKLGIESVCVKSDGFSLTSSSLLHPSSSTAKMGAK* 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8912410 8916885 + CsaV3_3G011300.1 Csa03g01130 522035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01130 1138 SUPERFAMILY Protein kinase-like (PK-like) 767 1063 IPR011009 -
Csa03g01130 1138 Gene3D Phosphorylase Kinase; domain 1 768 869 - -
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 335 431 IPR032675 -
Csa03g01130 1138 SUPERFAMILY L domain-like 384 701 - -
Csa03g01130 1138 Pfam Leucine rich repeat 393 452 IPR001611 GO:0005515
Csa03g01130 1138 ProSiteProfiles Protein kinase domain profile. 783 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 236 334 IPR032675 -
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 528 612 IPR032675 -
Csa03g01130 1138 SUPERFAMILY RNI-like 108 470 - -
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 432 527 IPR032675 -
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 613 700 IPR032675 -
Csa03g01130 1138 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 16 1130 - -
Csa03g01130 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Csa03g01130 1138 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 1130 - -
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 149 235 IPR032675 -
Csa03g01130 1138 Pfam Protein tyrosine and serine/threonine kinase 787 1062 IPR001245 GO:0004672|GO:0006468
Csa03g01130 1138 SMART LRR_typ_2 150 174 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 391 415 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 632 656 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 559 583 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 416 439 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 487 511 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 295 319 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 535 558 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 584 607 IPR003591 -
Csa03g01130 1138 SMART LRR_typ_2 343 367 IPR003591 -
Csa03g01130 1138 Gene3D Transferase(Phosphotransferase) domain 1 870 1081 - -
Csa03g01130 1138 SMART serkin_6 783 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01130 1138 ProSiteProfiles Leucine-rich repeat profile. 634 656 IPR001611 GO:0005515
Csa03g01130 1138 ProSitePatterns Protein kinases ATP-binding region signature. 789 812 IPR017441 GO:0005524
Csa03g01130 1138 PRINTS Leucine-rich repeat signature 418 431 - -
Csa03g01130 1138 PRINTS Leucine-rich repeat signature 632 645 - -
Csa03g01130 1138 Gene3D Ribonuclease Inhibitor 44 148 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00988 Csa-Chr2:9467191 Csa03g01130 Csa-Chr3:8912410 0 dispersed
Csa03g01130 Csa-Chr3:8912410 Csa07g01065 Csa-Chr7:10186707 0 dispersed
Csa05g00901 Csa-Chr5:6985023 Csa03g01130 Csa-Chr3:8912410 4.14E-40 dispersed
Csa03g01130 Csa-Chr3:8912410 Csa03g01135 Csa-Chr3:8937734 0 proximal
Csa03g00619 Csa-Chr3:5392437 Csa03g01130 Csa-Chr3:8912410 5.76E-07 transposed
Csa03g02207 Csa-Chr3:19206565 Csa03g01130 Csa-Chr3:8912410 1.54E-19 transposed
Csa05g01293 Csa-Chr5:13737132 Csa03g01130 Csa-Chr3:8912410 1.76E-06 transposed
Csa05g02568 Csa-Chr5:27039721 Csa03g01130 Csa-Chr3:8912410 2.77E-21 transposed
Csa06g00494 Csa-Chr6:4153606 Csa03g01130 Csa-Chr3:8912410 0 transposed
Csa06g02833 Csa-Chr6:24710337 Csa03g01130 Csa-Chr3:8912410 1.96E-19 transposed
Csa07g00257 Csa-Chr7:2008872 Csa03g01130 Csa-Chr3:8912410 1.04E-10 transposed
Csa07g01322 Csa-Chr7:13122826 Csa03g01130 Csa-Chr3:8912410 3.18E-32 transposed
Csa07g01394 Csa-Chr7:14158985 Csa03g01130 Csa-Chr3:8912410 0 transposed
Csa07g01755 Csa-Chr7:17937824 Csa03g01130 Csa-Chr3:8912410 2.33E-16 transposed
Csa07g02075 Csa-Chr7:20035071 Csa03g01130 Csa-Chr3:8912410 3.74E-136 transposed
Csa02g00996 Csa-Chr2:9583496 Csa03g01130 Csa-Chr3:8912410 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77975 PF07714 PK_Tyr_Ser-Thr 5.40E-39 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01130 - - csv:101206423 2189.85