Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01138 ATGAATCCAATTCTTGAACAGTGCGAGTTGAGAAAGACAGGGATAACATATCATCAAGCGATGAATTCGAAGCACGATGAAGACGAACAACAGCGACGGCAATGGGGTACAAGAGCGTGGGCCACACTCTCCGCCCTACGAGCCCGATCGCCGCTCATCCAATGCATCACCAACTTCGTTTCAATGGATTTAATGGCCAATACTCTCTTATCCGCCGGCGCCTCGCCGGCCATGCTTCATTCCGTCGAGGAGTTGCCAGATTTCACTCCTAACGCTGACGCTCTCTGTATCAATGTTGGCACGCTTTCCCCCGCCTGGTTGCCCGCCATGAAGTTCGCCGGTGAACTGGCGGTAAAGGCTGGGAAGCCTTGGGTTCTTGATCCGGTGGCGGTCGGAGCATCTAAATTCCGGATGATGGCTTGTTTGGAGCTTATGAGTCTGAAGCCCACCGTTGTTAGAGGGAATGGGTCCGAAATAATCGCTCTGTCTAAAGCTTCTTTGGACTCTAGTATGGGTGTGGATAGCTGTCATGAGTCGGTGGATGCTGTAGAAGCTGCAAAATCATTAGCTCAATCCAGTGGAGCAATAGTAGCAGTATCAGGAGCTGTGGACATAGTTACAGACGGGAAGCAAGTTATTGGCGCTCGAAATGGAGTGGCCATGATGCAAAAGATTACAGCAACTGGATGCTCAGTAACAGCCCTTATTGCTGCTTTCCTTGCTGTCGATCAACTTCATGCTTTAGAAGCAACAGCTTCGGCTTTATCAATATTTGGAATTGCAGGAGAAATGGGAATGGATGTGGCAAAGGGCCCTGCATCACTACGAACTCATTTGATTGATTCACTTTATGGGCTCGATGAAGCTGCTATAATCTCGCGAATAAGGATCTCCAGCTTGTGA 903 49.28 MNPILEQCELRKTGITYHQAMNSKHDEDEQQRRQWGTRAWATLSALRARSPLIQCITNFVSMDLMANTLLSAGASPAMLHSVEELPDFTPNADALCINVGTLSPAWLPAMKFAGELAVKAGKPWVLDPVAVGASKFRMMACLELMSLKPTVVRGNGSEIIALSKASLDSSMGVDSCHESVDAVEAAKSLAQSSGAIVAVSGAVDIVTDGKQVIGARNGVAMMQKITATGCSVTALIAAFLAVDQLHALEATASALSIFGIAGEMGMDVAKGPASLRTHLIDSLYGLDEAAIISRIRISSL* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8958554 8961795 + CsaV3_3G011380.1 Csa03g01138 522043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01138 300 CDD THZ_kinase 43 284 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 Pfam Hydroxyethylthiazole kinase family 43 287 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 SUPERFAMILY Ribokinase-like 36 296 IPR029056 -
Csa03g01138 300 Gene3D - 18 297 IPR029056 -
Csa03g01138 300 PIRSF Thz_kinase 37 300 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 Hamap Hydroxyethylthiazole kinase [thiM]. 45 292 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 PRINTS Hydroxyethylthiazole kinase family signature 51 58 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 PRINTS Hydroxyethylthiazole kinase family signature 64 85 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 PRINTS Hydroxyethylthiazole kinase family signature 95 103 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 PRINTS Hydroxyethylthiazole kinase family signature 121 138 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 PRINTS Hydroxyethylthiazole kinase family signature 151 165 IPR000417 GO:0004417|GO:0009228
Csa03g01138 300 PRINTS Hydroxyethylthiazole kinase family signature 196 213 IPR000417 GO:0004417|GO:0009228
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01138 K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] - csv:101219530 565.459
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g834 . . . . . . . . . . Cma06g01273 . Car06g01094 . . . . Bhi01g00017 . . . . . . . . . . . . . . Cone15ag0225 . . Lsi05g01801 . . Cme06g00419 Blo02g00635 . . . . . Bma02g00740 . . Cmo06g01281 . . . . . . . . . . . . . . Cla05g00381 Cam05g0414 Cec05g0419 Cco05g0419 Clacu05g0410 Cmu05g0393 Cre05g0455 . Csa03g01138 Chy06g00404 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012500 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01138 Csa_Chr03 FPKM 0.398148 0.263468 0.0 0.261456 0.611647 0.37334 0.848044 1.30165 1.172801 1.176513