Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01139 ATGAGACAAGCATCTTTTCCTGCCTTCCTTGCAACAGCGATCATCGTAGTGCATTTTGTGGCATTTAGGTCTGCAGCTGTCACTGCCAATGTCGGGGCACATGAGCCAGTCCTTGAATTTTATATGCACGACATTCTTGGCGGTGCCAGCCCAACGGCGAGACCGATAACTGGTCTGCTAGGGAACATATACACTGGTCAAGTACCCTTTGCAACACCTATAGGGTTTCTTCCCCCAGATGGTGGTGTAGCGATCCCAAATGCCAATGGTGCTCTCCCTACTGTGAATGGCATCAATGGGATCCCTCTAGGGACTGGCTTGTCTGGCACTTCTTTCGCTGGAAATCCCAACCCACAAAATGTCCCCCAGACCCAACTGGGACCTGATGGGTTGGGGCTAGGCTTTGGAACAATTACAGTCATCGATGACGTCTTGACCACCTCGCCAGAGTTGGGCTCGCAGTCAATTGGCCAGGCACAAGGGGTGTATGTGGCTAGTTCGGCTGATGGAACTACACAGATGATGGCATTTACAGCCATGGTTGAAGGAGGAGAATATGGTGACAGTCTCAACTTCTATGGAGTATTCAGGATTGGTAGCCCCTCGTCGCATTTGTCAGTGACTGGAGGAACTGGCAAGTTCAAGAATGCACGTGGTATTGCAGAGGTGCGATCCCTCATTCCTCCGGGCCAGCACGTGGCAGATGGAGCAGAAACATTGCTGAGGGTCCTTGTACATCTAACCTACTGA 750 51.33 MRQASFPAFLATAIIVVHFVAFRSAAVTANVGAHEPVLEFYMHDILGGASPTARPITGLLGNIYTGQVPFATPIGFLPPDGGVAIPNANGALPTVNGINGIPLGTGLSGTSFAGNPNPQNVPQTQLGPDGLGLGFGTITVIDDVLTTSPELGSQSIGQAQGVYVASSADGTTQMMAFTAMVEGGEYGDSLNFYGVFRIGSPSSHLSVTGGTGKFKNARGIAEVRSLIPPGQHVADGAETLLRVLVHLTY* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8960830 8961579 - CsaV3_3G011390.1 Csa03g01139 522044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01139 249 Gene3D - 116 245 IPR044859 -
Csa03g01139 249 PANTHER DIRIGENT PROTEIN 16 5 249 - -
Csa03g01139 249 PANTHER DIRIGENT PROTEIN 24-RELATED 5 249 IPR004265 -
Csa03g01139 249 Pfam Dirigent-like protein 116 225 IPR004265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01139 - - - csv:101219771 498.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01139 Csa-Chr3:8960830 Csa05g01794 Csa-Chr5:21272205 1.06E-48 dispersed
Csa03g01139 Csa-Chr3:8960830 Csa02g02663 Csa-Chr2:23206752 8.60E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g832 . . . . . . . . . . . Cma14g01865 . . . Cpe08g00375 Cpe03g01563 . . . . . . . . . . . . . . . . . . Lsi05g01799 . . Cme06g00420 Blo02g00636 . Bda11g00655 Bda13g00030 . . Bma02g00741 Bma06g01622 . . Cmo14g01910 . . . . . . . . . . . . . Cla05g00382 Cam05g0415 Cec05g0420 Cco05g0420 Clacu05g0411 Cmu05g0394 Cre05g0456 . Csa03g01139 Chy06g00405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006899 2 1 1 2 0 1 0 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01139 Csa_Chr03 FPKM 13.969542 13.278781 34.973732 35.833767 52.773186 63.649433 51.599709 36.973694 37.766129 36.616901