Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01140 ATGTTAGAAAGGAGAGCTGAAAGCTTCTTCTTAGTTCCTTTAGAGGAGCATTTTAAAATGCCTGCAGCTTGGTGGAAGCATCAAGCAGAAGTGTGGTGGGGAAATCAAAGAATGAGTCAAGGAGGTGAAGGTAGAGGAGAACATACCAGACAAGGAAACTCGGACTTTGTTTCTTGGGAAACTCCAAATGCTGATTATGCAAATGAAAAGAAGAAGTCCTTACGAGTGCGCTACGTATATAGCATTATCTTCCTGATAACAAATCTCATTGCTTGGTTTCTTCGAGATTATGGGCAAAGGATTCTTCCTCAGCTACACTATCTTAAACCATGCGGAGCAGGAGGACAGGATTGTTTTCACGCACTCGGAGTTCTTCGTGTGAGCTTAGGATGTTTTATATTTTTCTTTCTGATGTTTCTCTCTACATCCAGAACAAGAAAATTACATGAACCTCGCAACGTGTGGCATTCTAGTTGGTGGAGCTTGAAGTTTATTGTGTTTATTGTTTCTATGCTGGCTCCATTTTTCTTCCCTCCCGCGCTTATCCAATTATATGGTGAGTTTGCGCGTGCTGGTGCAGGGATATTTCTCATTCTCCAACTGGTTAGTATTATCCAGTTTATCTCATGGTGGAACAAGTACTGGATGCCTGATGAGAAGATGAAGCAGAGCTGCTCCCTCGGATTATTCACGTCGACAATTTTTTATATAGCTTCATTCTGTGGAATTGGCTTAATGTACTCCTTATACGTTCCAAAACTGAGATGTGTTCTCAATATATTCTTCATCTCTTGGACTTTGATTTTGCTCATTGTGATGATGGCTGTATCTTTACATTCAAAGGTTAATAGAGGTCTGTTGTCATCCGGTATCATGGCTTCGTACGTTGTCTTCCTCTGCTGGTCTGCCATTAGAAGTGAACCTACGACCGAAAAATGCAGTGCACGGAAGGAAGAGAGTGGGAACAGTGACTGGATTACAATACTTAGTTTCTTAATTGCAATATGTGCTGTTGTCATGGCAACCTTCTCAACTGGTATTGATTCACAATCATTTCAGTTCCGAAAAGATGAAGTGAAAGAGGAAGATGATATTCCTTACAAGTATGGTTTTTTCCATCTCACATTCTCTCTCGGGGCCATGTACTTTGCTATGCTCTTCATCAGCTGGAACCTCAACAACTCAGCCACAAAGTGGAGTATGGATGTTGGATGGACAAGTACTTGGGTTAAAATCATCAATGAATGGTTTGCAGCCACAATATACTTGTGGACGTTAATGTCTCCAGTGGTGAGAAAGGCAAAGGTGAGAGATTATGAGGAAGGAGCTGTAGTGCAAGAGGCAAATGATTCAGCAGATTCAGCAGATTCAGCAATTCCTTGA 1383 41.43 MLERRAESFFLVPLEEHFKMPAAWWKHQAEVWWGNQRMSQGGEGRGEHTRQGNSDFVSWETPNADYANEKKKSLRVRYVYSIIFLITNLIAWFLRDYGQRILPQLHYLKPCGAGGQDCFHALGVLRVSLGCFIFFFLMFLSTSRTRKLHEPRNVWHSSWWSLKFIVFIVSMLAPFFFPPALIQLYGEFARAGAGIFLILQLVSIIQFISWWNKYWMPDEKMKQSCSLGLFTSTIFYIASFCGIGLMYSLYVPKLRCVLNIFFISWTLILLIVMMAVSLHSKVNRGLLSSGIMASYVVFLCWSAIRSEPTTEKCSARKEESGNSDWITILSFLIAICAVVMATFSTGIDSQSFQFRKDEVKEEDDIPYKYGFFHLTFSLGAMYFAMLFISWNLNNSATKWSMDVGWTSTWVKIINEWFAATIYLWTLMSPVVRKAKVRDYEEGAVVQEANDSADSADSAIP* 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8963019 8968489 - CsaV3_3G011400.1 Csa03g01140 522045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01140 460 PANTHER SERINE INCORPORATOR 48 442 IPR005016 GO:0016020
Csa03g01140 460 PANTHER SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN 48 442 - -
Csa03g01140 460 Pfam Serine incorporator (Serinc) 355 432 IPR005016 GO:0016020
Csa03g01140 460 Pfam Serine incorporator (Serinc) 70 357 IPR005016 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01140 K23544 SERINC1; serine incorporator 1 - csv:101207145 932.169
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00139 Csa-Chr2:972182 Csa03g01140 Csa-Chr3:8963019 6.38E-141 dispersed
Csa03g01140 Csa-Chr3:8963019 Csa06g01558 Csa-Chr6:13126632 1.95E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g831 . . . . . . . . . . Cma06g01274 . Car06g01095 . . Cpe08g00373 . Bhi01g00020 . . . Hepe05g1854 . . . . . . . . . Cone14ag0204 . . . . . . Cme06g00421 . . . . . . . . . Cmo06g01282 . . . . . . . . . . . . . . Cla05g00383 Cam05g0416 Cec05g0421 Cco05g0421 Clacu05g0412 Cmu05g0395 Cre05g0457 . Csa03g01140 Chy06g00406 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013546 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01140 Csa_Chr03 FPKM 15.466784 16.595144 25.567259 27.047258 34.743923 28.446875 36.108227 25.267075 22.651962 24.070328