Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01145 ATGGAAGAATTGAAACTCCATGGAACTTGGCCAAGCCCTTTCAGTTACAGAGTCATTTGGGCTTTGGCACTCAAAGGCATTCCCTACCAATACATTGAAGAAGATCTCTCCAACAAATCTCCTCTGCTTTTGCAATACAATCCCGTTCACAAGAAGATTCCGGTCCTCGTCCATGCCGGAAAACCCATCTCCGAATCCATGATCATTCTCGAATACATCGAACAAACATGGCCGCAAAATCCCTTGCTGCCTTCCGATCCTTACGAGAGAGCCACCGCTCGATTCTGGATCAAATTCATTGACGATAAGGGCACGGTGGTTTTTAAGATATTTCGTGCGAAGAATGAGGAAGAACGGGAGGATGCGAAGAAACAGAGCTTGGAGATGCTGAGAACCGTCGAAGAATGGGGATTCAGCGGCGGAGAGAGGAAATTCTTCGGCGGAGATGATATCGGAATGGCGGATTTGGCGTTCGGCGCTATTGCGTATTGGTTGGGAATGATTGAGCAAGTGACGGGAGTGAAATTGTTGGACGTCGACGAGTTCCCTCAGGTGTGTGGTTGGATTGGAAGATTCAAGGAAGCGCCGGTGATCAGAGATAATCTGCCGGACTGGAACCCCATGATGGAGAATTTCCGTCGCCGGCGGGAGCAACTGTTGGAATCTGCGAAAACATAA 678 48.82 MEELKLHGTWPSPFSYRVIWALALKGIPYQYIEEDLSNKSPLLLQYNPVHKKIPVLVHAGKPISESMIILEYIEQTWPQNPLLPSDPYERATARFWIKFIDDKGTVVFKIFRAKNEEEREDAKKQSLEMLRTVEEWGFSGGERKFFGGDDIGMADLAFGAIAYWLGMIEQVTGVKLLDVDEFPQVCGWIGRFKEAPVIRDNLPDWNPMMENFRRRREQLLESAKT* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8980126 8981653 - CsaV3_3G011450.1 Csa03g01145 522050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01145 225 CDD GST_N_Tau 4 77 - -
Csa03g01145 225 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
Csa03g01145 225 CDD GST_C_Tau 87 215 IPR045074 GO:0004364|GO:0006749
Csa03g01145 225 Gene3D - 86 223 - -
Csa03g01145 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Csa03g01145 225 SFLD Main.3: Omega- and Tau-like 1 223 IPR045073 -
Csa03g01145 225 Gene3D Glutaredoxin 1 85 - -
Csa03g01145 225 PANTHER GLUTATHIONE S-TRANSFERASE 1 217 - -
Csa03g01145 225 SUPERFAMILY GST C-terminal domain-like 75 217 IPR036282 -
Csa03g01145 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 217 IPR045073 -
Csa03g01145 225 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Csa03g01145 225 SFLD Glutathione Transferase (cytosolic) 1 223 IPR040079 -
Csa03g01145 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 218 IPR010987 -
Csa03g01145 225 Pfam Glutathione S-transferase, C-terminal domain 110 194 IPR004046 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01145 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207387 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01145 Csa-Chr3:8980126 Csa03g01147 Csa-Chr3:8987537 1.11E-64 dispersed
Csa03g01143 Csa-Chr3:8974326 Csa03g01145 Csa-Chr3:8980126 1.31E-90 proximal
Csa03g01145 Csa-Chr3:8980126 Csa03g01146 Csa-Chr3:8982297 1.75E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01145 Csa_Chr03 FPKM 16.449133 19.812775 18.379246 17.274208 16.084322 14.010893 20.996069 14.175571 15.196028 21.994486