Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01147 ATGGATGAAGTGAAGCTGCATGAAAATTGGTTAAGCCTTTCCGCATGCAAAGTCATTTGGGCTCTGTCCCTCAAAGACATACCCTACCGATATGAAGAAGAAGGTATCACCAACAAAACTCCTTTCCTTCCTTATTCTAACTCCGTCTCTGTCATCGTGGACGGAAAATCGATCTCCGACTCCTCTGTTATTCTCGAATACATTGACGAGACGTGGCCGCAAAACCCCTTACTCCCTTCCGATCTCCTCGACAAAGCTACGGCTCGGTTTTGGATTCGATTCATTGATGATAAGGGGGCGGCCATAACTAGAATGTTCTACCCGGGCGGGAAGGAACAGGGGGCGAAGGTGGAAAGCTTAGAGATGCTGCGAATATTAGAAGAGGAAGTGATCGGCGAGGAGAAATTCTTCGGCGGAGAGAAGATCGGGATGGTGGACTTGGCATTCGGAGAATTTGTAGAGTGGTTGGGAGTGTTTGAAGAAGTAATCGGAGAGAAATTGTTGGAATCGGGCTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGCTTTCATGGCAGTTCCAGCCATTAGTGAGAATCGTGCGGATCGAAATGGGATGGTGGAGAATATCAAGCGTTTTAGGATTCCGCTTCCGCAACATCGTTCTGCGTTGAATTCATCCAATGATATGAAGAACGTTCTTGGGTTTTTGGAGCTCTTTCGATGTTTTTGTGAACTCGTTTCTATCGTTGGCAGGCCGAACAAGAAAGCTCCTCCATTATTGACAGTAATGGATGAAGTGAAGCTATATGGGCACTGGTCGAGTCCTTTCGTTTATAGAGTTATATGGGCTTTGAAAATCAAAGCTATTCCCTACGAATATGTAGAAGAAGATATTCACAACAAAAGTCCTTTCCTTCTTCACTACAACCCTGTCTACAAGAGGGTTCCTGTCCTCGTTCATGGCGGAAAATCTATCTGTGAGTCTACTGTCATCCTTGAATACATCGACGAGACATGGCCACAAAACCCTTTACTTCCCGTTGATCCACTCGATCGAGCTACCGCACGATTTTGGATTCAATTCGTTGAGAATATGGGGCTAACCACATGGACAATGTTTTGTTCGAGTGGGGAGGAGCGAGAAAAGAAAAGGCGAGAGAGCTTGGAAATGCTGCAAATTGTAGAAGAGAAAGCAATCGAGGACCAAAAATTCTTTGGTGGAGAGAAGATCGGGATGGTAGATTTGGTGTATGGAGTATTTGGATATTGGTTGGGAGTGATCGAAGATCTAATTGGCGAGAAATTGATAGAAACATCTACGTTTCCTCAACTGCATGCTCGGATAAAAGTTTTCTTGCAAGATCCAATAATTCGAGAGAATTGTCCCGATCGAGATCGGATGGCCATTTCTTTCAAAGCCATAAGGGAGCGACTTCTTGGATCAAGATGA 1431 45.0 MDEVKLHENWLSLSACKVIWALSLKDIPYRYEEEGITNKTPFLPYSNSVSVIVDGKSISDSSVILEYIDETWPQNPLLPSDLLDKATARFWIRFIDDKGAAITRMFYPGGKEQGAKVESLEMLRILEEEVIGEEKFFGGEKIGMVDLAFGEFVEWLGVFEEVIGEKLLESGSFPRLEAWSRAFMAVPAISENRADRNGMVENIKRFRIPLPQHRSALNSSNDMKNVLGFLELFRCFCELVSIVGRPNKKAPPLLTVMDEVKLYGHWSSPFVYRVIWALKIKAIPYEYVEEDIHNKSPFLLHYNPVYKRVPVLVHGGKSICESTVILEYIDETWPQNPLLPVDPLDRATARFWIQFVENMGLTTWTMFCSSGEEREKKRRESLEMLQIVEEKAIEDQKFFGGEKIGMVDLVYGVFGYWLGVIEDLIGEKLIETSTFPQLHARIKVFLQDPIIRENCPDRDRMAISFKAIRERLLGSR* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8987537 8989787 + CsaV3_3G011470.1 Csa03g01147 522052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01147 476 SFLD Main (cytGST) 1 207 - -
Csa03g01147 476 SFLD Main (cytGST) 257 473 - -
Csa03g01147 476 PANTHER GLUTATHIONE S-TRANSFERASE 257 470 - -
Csa03g01147 476 PANTHER GLUTATHIONE S-TRANSFERASE 1 208 - -
Csa03g01147 476 SUPERFAMILY GST C-terminal domain-like 331 471 IPR036282 -
Csa03g01147 476 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 76 IPR004045 -
Csa03g01147 476 SUPERFAMILY Thioredoxin-like 4 97 IPR036249 -
Csa03g01147 476 SUPERFAMILY GST C-terminal domain-like 70 206 IPR036282 -
Csa03g01147 476 CDD GST_C_Tau 343 468 IPR045074 GO:0004364|GO:0006749
Csa03g01147 476 SFLD Main.3: Omega- and Tau-like 257 473 IPR045073 -
Csa03g01147 476 SFLD Main.3: Omega- and Tau-like 1 207 IPR045073 -
Csa03g01147 476 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 257 470 IPR045073 -
Csa03g01147 476 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 208 IPR045073 -
Csa03g01147 476 CDD GST_C_Tau 84 206 IPR045074 GO:0004364|GO:0006749
Csa03g01147 476 Pfam Glutathione S-transferase, C-terminal domain 117 187 IPR004046 -
Csa03g01147 476 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 258 337 IPR004045 -
Csa03g01147 476 SUPERFAMILY Thioredoxin-like 259 358 IPR036249 -
Csa03g01147 476 Pfam Glutathione S-transferase, N-terminal domain 260 331 IPR004045 -
Csa03g01147 476 CDD GST_N_Tau 260 333 - -
Csa03g01147 476 Gene3D Glutaredoxin 1 80 - -
Csa03g01147 476 Gene3D Glutaredoxin 255 341 - -
Csa03g01147 476 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 342 465 IPR010987 -
Csa03g01147 476 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 81 206 IPR010987 -
Csa03g01147 476 Gene3D - 81 210 - -
Csa03g01147 476 Gene3D - 342 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01147 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207882 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01145 Csa-Chr3:8980126 Csa03g01147 Csa-Chr3:8987537 1.11E-64 dispersed
Csa03g01147 Csa-Chr3:8987537 Csa03g00999 Csa-Chr3:8073072 7.08E-18 dispersed
Csa03g01146 Csa-Chr3:8982297 Csa03g01147 Csa-Chr3:8987537 1.98E-56 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017478 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01147 Csa_Chr03 FPKM 2.022694 3.202621 4.478897 5.042327 7.449398 7.781247 9.42375 9.157154 8.656775 7.356618