Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01149 ATGATGAATAATAATACCTGTATCAGCATTCCTCCATTGGCTCAGACCATGGATGGTGATCACTTCTTTGATCATCGGTGTATATGGGTCAATGGACCGGTGATCGTCGGAGCAGGACCATCTGGATTGTCAGTAGCAGCTGCTCTCAAACAACAAGGAGTCCCCTTCGTAGTCGTTGACCGAGCTGACTGCATTGCCTCTCTTTGGCAGCACCGGACCTATGATCGTCTCAAACTTCACCTTCCAAAGCAATTCTGTCAACTTCCCAACTTCCCTTTCCCAGAGGAGTTTCCTGCTTACCCCTCCAAGTTTCAGTTCATTTCTTACTTGGAATCCTATGCCAACCATTTTGATATCACCCCATGTTTCAACGAAACAGTACAGTCGGCCAAGTATGATGAAACTTTTGGCTTGTGGCGAGTCAAAACCCTTTCGTTGAGTCCGAAGCCAACTCAGGTCGAGTACATTTGCCGGTGGTTGGTCGTTGCCACGGGAGAGAATGCTGAGAAGGTTGTGCCGGAGTTTGAAGGGATGGAGGAATTTGGTGGTCATGTCATGCATGCTTGTGAATACAAATCCGGTGAGGCTTACCGTGGGAAACGGGTGCTTGTTGTTGGGTGTGGGAACTCCGGCATGGAAATTTCACTTGATCTTTGTAACCATGATGCCAAGCCATCCATGGTGGTACGAAGCTCGGTTCATGTATTGCCAAGAGAAATACTTGGAAAATCAACTTTTGAAGTTGCAATTTCACTGATGAAATGGCTGCCACTTCATATGGTGGACAAGATGCTGTTGATCATTGCCAGACTTGTTCTTGGGAACGTTGAGAAGTACGGACTCAAGAGGCCATCAGTGGGACCTTTGCAGCTTAAGAATGCCGCTGGTAAGACACCCGTATTGGATATTGGAGCACTGCAGAAGATAAGAGCCGGCGAGATCAAGGTGGTGGCCGGCATAAAAAAATTCCGGCGAGGTGCAGTAGAACTGGTCAATGGAGAAGTTATAGAGATCGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGACTCTACGCTGTTGGGTTTACAAGAAAAGGCTTATCAGGAGCTTCACTGGATGCCATTAATGTAGCTCAGGACATTGCCAAGAGCTGGAAAGAAGATACTAAACAAAAGAGAAAATCAGTGGCAGCTCGCCACAGAAGATGCATTTCACATTTTTAA 1296 46.45 MMNNNTCISIPPLAQTMDGDHFFDHRCIWVNGPVIVGAGPSGLSVAAALKQQGVPFVVVDRADCIASLWQHRTYDRLKLHLPKQFCQLPNFPFPEEFPAYPSKFQFISYLESYANHFDITPCFNETVQSAKYDETFGLWRVKTLSLSPKPTQVEYICRWLVVATGENAEKVVPEFEGMEEFGGHVMHACEYKSGEAYRGKRVLVVGCGNSGMEISLDLCNHDAKPSMVVRSSVHVLPREILGKSTFEVAISLMKWLPLHMVDKMLLIIARLVLGNVEKYGLKRPSVGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVAGIKKFRRGAVELVNGEVIEIDSVILATGYRSNVPSWLKENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRKGLSGASLDAINVAQDIAKSWKEDTKQKRKSVAARHRRCISHF* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8999806 9002526 - CsaV3_3G011490.1 Csa03g01149 522054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01149 431 SUPERFAMILY FAD/NAD(P)-binding domain 34 233 IPR036188 -
Csa03g01149 431 Pfam Flavin-binding monooxygenase-like 35 352 IPR020946 GO:0004499|GO:0050660|GO:0050661
Csa03g01149 431 PRINTS FAD-dependent pyridine nucleotide reductase signature 33 52 - -
Csa03g01149 431 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Csa03g01149 431 PRINTS FAD-dependent pyridine nucleotide reductase signature 201 219 - -
Csa03g01149 431 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 17 429 - -
Csa03g01149 431 Gene3D - 33 415 IPR036188 -
Csa03g01149 431 SUPERFAMILY FAD/NAD(P)-binding domain 197 410 IPR036188 -
Csa03g01149 431 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 17 429 - -
Csa03g01149 431 PRINTS Pyridine nucleotide disulphide reductase class-II signature 32 54 - -
Csa03g01149 431 PRINTS Pyridine nucleotide disulphide reductase class-II signature 197 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01149 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221268 882.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01149 Csa-Chr3:8999806 Csa03g01792 Csa-Chr3:13573415 1.92E-113 dispersed
Csa01g01717 Csa-Chr1:13730344 Csa03g01149 Csa-Chr3:8999806 1.37E-172 transposed
Csa01g01832 Csa-Chr1:15427051 Csa03g01149 Csa-Chr3:8999806 8.37E-17 transposed
Csa01g03023 Csa-Chr1:26347096 Csa03g01149 Csa-Chr3:8999806 5.14E-20 transposed
Csa02g02289 Csa-Chr2:20445049 Csa03g01149 Csa-Chr3:8999806 0 transposed
Csa02g02352 Csa-Chr2:20887652 Csa03g01149 Csa-Chr3:8999806 0 transposed
Csa06g01050 Csa-Chr6:8590172 Csa03g01149 Csa-Chr3:8999806 1.29E-10 transposed
Csa06g01069 Csa-Chr6:8757610 Csa03g01149 Csa-Chr3:8999806 1.71E-13 transposed
Csa06g01993 Csa-Chr6:17931427 Csa03g01149 Csa-Chr3:8999806 6.57E-13 transposed
Csa07g01737 Csa-Chr7:17803385 Csa03g01149 Csa-Chr3:8999806 7.93E-109 transposed
Csa03g01149 Csa-Chr3:8999806 Csa03g02650 Csa-Chr3:25053439 0 wgd
Csa03g01149 Csa-Chr3:8999806 Csa06g00723 Csa-Chr6:5889661 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01149 Csa_Chr03 FPKM 5.080808 6.817028 2.420259 1.285959 2.134194 2.836808 1.865272 0.74436 0.557968 0.585992