Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01150 ATGGCTAGTCAAGTAAATCTAGCGGTTGGATCACTTGTTTGGGTTGAGGATCCTGAGGTAGCTTGGCTAGATGGGGATGTCCTGGAAGTTAATGGTGAAGACATCAAAGTACTTTGTACGTCAGGAACTACTGTTGAGGTCAAATCATCAAATGTCTATCCGAAGGATCCTGAATTTCCTCCATGTGGTGTGGATGATATGACAAAACTAGCTTATTTGCATGAGCCGGGGCTTCTACAAAACTTAAAATCTCGTTATGATGTTAATGAAATTTATACCTATACTGGAAGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATCACATGATGCAACAATATAAAGGTGCAGCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCTTATAGACAGATGATTAATGAAAGTATCAGCCAGTCAATTTTAGTTAGTGGGGAAAGTGGTGCTGGTAAAACAGAGAGTACAAAGATGCTTATGCGCTATCTTGCCCATGTTGGAGGGAGAGCTGGAGGGAAGGCTGCAACTGGTGAACGTTCTGTAGAGCAGCAAGTACTAGAGTCGAACCCTGTTCTTGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGCCGTTTTGGTAAATTTGTGGAGATCCAATTTGATCAGAGCTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGGAATTATCATTGCTTCTATATGCTTTGTGCCGCACCGACAGAGGATATTGAGAAGTATAAATTAGGGAATCCAAGAACATTTCATTATCTTAATCAGTCTAATTGCTATGAACTTGATGGAGTGGATGATTCCAAGGAATATCTTTCAACTAGGAAAGCTATGGATGTTGTTGGAATAAGTACAACTGAGCAGGATGCGATATTTCGAGTTGTAGCTGCGGTACTTCATTTGGGCAACGTCGAATTTGCAAAGGGGACGGAGATAGATTCCTCTGAACCGAAGGATGACAAAGCTCGGTTCCATCTCAAAATGGCAGCAGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGAGTGATAGTTACACGCGATGAAACCATAACTAAATGTCTTGATCCGGACTCTGCAACTCTTAGTAGGGATGCTTTAGCAAAGATCGTTTATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCCTGATTCGAAGAACTTAATTGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACCTGACCAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCTCTTCTGGATGAGGCTTGCATGTTTCCGAGATCTACACATGATACTTTTGCGCAGAAACTATATCAAACTTTTAAGGACCATAAGCGTTTTAGTAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCACCAAGCACTGCTGAGTGCTTCCAAGTGCACCTTTGTTGCAGGACTCTTCCCCCCCTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTCGATTTAAGCAACAACTTCAATCTTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATTCGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGGCATCTTTGAGAACAATAATGTTTTGCAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCTACTAGGAAAACGTTTGATGAATTTATTGGTCGGTTTACTATCTTGGCACCTGGTGTTTTGAAGGGAAGCTCTAATGAAGCCACTGGGTGTAAGAGGCTTTTGGAGAAAGTGAACATTAAAGGGTATCAGATTGGTAAAACCAAAGTATTTCTTAGGGCTGGTCAAATGGCAGAATTAGATGCTTGCCGAACTGAGGTCTTGGGAAGATCTGCTATGGTTGTCCAAAGGAAAGTACGCTCATATTTGGGACGCAAAAACTTTATATTGTTGCGGTTGGCTGCTATACAAATTCAAGCCCTGTGTAGAGGGCAAATTGCACGCCAGCATTATGAAGACATTAGAATGGAAGCTGCTTCCATCAAAATCCAAAAGTATTGGCGTATGCATTTTGCCCGATGTTGCTATAAAAGAATTTGCACTTCAGCTGTAGCTATTCAAGCAGGTATCCACGGTATGGTTGCTCGCAAAGAGCTTAAGTTCAGGAGACAAACAAGAGCTGCAATTATCATTCAGAGTCGATGTCGGCAATACTTGGCCTGTATGCATTATGTGAGGATTAGAAAAGCTGCAATTACTACTCAATGTGCTTGGAGAGGAAGAGTTGCACGAAAAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAAATCTGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAAACGAATGAGGGCTGACATGGAGGAAGCCAAGACTCGAGAAAACACAAAATTGAAGGCTGATTTAGAAGAAATGCGAACTCAATTTCAGGAAACAAAAGCACTGCTTAATGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGCAAGTTCCTGTCATACAAGAGGTTCCCGTTGTTGATAATGAGCTGATCACTAAGTTAACTACTGAAAATGAACAACTGAAGGCTCATGTAAGTTCGTTGGAAAATAAAATTGATGAAACAGAAAGGAAATTTGAGGAAAGTAACCGTCTTAGTGAAGAGCGGCTTAAGCAGGCTACAGAGGCAGAGTCAAAGATAATTGAATTAAAAACTGCCATGCAAAGGCTTGAGGAAAAAGTATCCGACTTGGAAACTGAGGACCAAATTCTTAGGCAGCAAACACTGCTAAAGCCTCCTTCAAGAAAAATGTCTGGACGTATAGCAATTCAGCCTTTGGAAAATGGCCACCACGACTTACTAAGCAATGCACCCTCAAAAAAGTATGGTACCGATGCTGATGCAAAATTGAGGAGATCCCAGATTGAAAGGCAGAACGAAGGAATGGACGCTCTATCAAAATACCTGACACAGGATCTTGGGTACAGTGAGGGAAAACCTATTGCTGCTTTTGTAATTTATAAATCTTTCCTTCATTGGAGATCATTTGAAGCTGAAAAAACAAGTGTTTTTGATCGGCTAATTCAGCTGATTGGTTCTGCAATTGAGAATCAGGATGATGATGAACTTATGACCTATTGGTTATCCAACACAACCACATTGTTGTTCCTTCTTCAAAAGAGTTTAAAAGCCACACCACGGAAGCCTCCCACCCCTACATCATTTTTTGAGCGGATGACCCAAGGGTTTCGGTCATCTTCTGCCCTTCCAGTTGGCACCCTTGATGTGGTGCGGCAAGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCGTATGTAGAAAAGATATTTGGAATAGTTAGAGACAATCTAAAGAAGGAACTATCGCCGTTGATTTCAGCTTGTATCCAGGCTCCAAGATCTTCAAGAGGAAATATTTTAAAATCATCTGGCCAGGAAAATAGCAGTAGCCCTCCCAGTAGTAGTAATTCATGGAGCAGCATCATCGGGAGCCTCAACGATCATCTGTGTAGATTGCAACAGAACTTCGTGCCTAACGTTTTGGTTCAGAAGATGTTCACTCAGGTTTTTTCATGTATCAACGTTCAACTTTTCAACAGTCTTTTACTTCGTCGAGAGTGCTGTACGTTTAGCAATGGGGAATATGTGAAGTCAGGATTGGCTGAGTTAGAGATTTGGTGTTCTCAAGCAAAAGAAGAGTATGCTGGGTCATCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGACCTCTGTCCAATATTGAGCGTTCAACAGCTTTATAGAATATGTACTCTTTATTGGGACGACAATTACAATACTAGGAGTGTAGCTCCAGATGTTATTTCTAGCATGAAAGTTATGATGACTGAGGATTCCAACGATGAAGATAGTAGTTCCTTTTTGTTAGATGACAATTCCAGTATACCTTTCGCGGTTGATGACATATTCACTTCCCTGCAAGAAAAGAATTTTCAGGATGTAAAGCCTCCAGCAGAACTACTAGAGAATCCGGCCTTCCAATTTTTACAGGAATAA 4500 40.87 MASQVNLAVGSLVWVEDPEVAWLDGDVLEVNGEDIKVLCTSGTTVEVKSSNVYPKDPEFPPCGVDDMTKLAYLHEPGLLQNLKSRYDVNEIYTYTGSILIAVNPFRRLPHLYDNHMMQQYKGAALGELSPHPFAIANSAYRQMINESISQSILVSGESGAGKTESTKMLMRYLAHVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEDIEKYKLGNPRTFHYLNQSNCYELDGVDDSKEYLSTRKAMDVVGISTTEQDAIFRVVAAVLHLGNVEFAKGTEIDSSEPKDDKARFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDPDSATLSRDALAKIVYSRLFDWIVDKINNSIGQDPDSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCTFVAGLFPPLPEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPGVLKGSSNEATGCKRLLEKVNIKGYQIGKTKVFLRAGQMAELDACRTEVLGRSAMVVQRKVRSYLGRKNFILLRLAAIQIQALCRGQIARQHYEDIRMEAASIKIQKYWRMHFARCCYKRICTSAVAIQAGIHGMVARKELKFRRQTRAAIIIQSRCRQYLACMHYVRIRKAAITTQCAWRGRVARKELRKLKMAAKETGALQAAKNLLEKQVEELTWRLQLEKRMRADMEEAKTRENTKLKADLEEMRTQFQETKALLNEEREAAKKVVEQVPVIQEVPVVDNELITKLTTENEQLKAHVSSLENKIDETERKFEESNRLSEERLKQATEAESKIIELKTAMQRLEEKVSDLETEDQILRQQTLLKPPSRKMSGRIAIQPLENGHHDLLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTQDLGYSEGKPIAAFVIYKSFLHWRSFEAEKTSVFDRLIQLIGSAIENQDDDELMTYWLSNTTTLLFLLQKSLKATPRKPPTPTSFFERMTQGFRSSSALPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIFGIVRDNLKKELSPLISACIQAPRSSRGNILKSSGQENSSSPPSSSNSWSSIIGSLNDHLCRLQQNFVPNVLVQKMFTQVFSCINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWCSQAKEEYAGSSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVAPDVISSMKVMMTEDSNDEDSSSFLLDDNSSIPFAVDDIFTSLQEKNFQDVKPPAELLENPAFQFLQE* 1500
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 9010824 9028523 - CsaV3_3G011500.1 Csa03g01150 522055
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01150 1499 ProSiteProfiles IQ motif profile. 858 887 IPR000048 GO:0005515
Csa03g01150 1499 PANTHER MYOSIN 6 1497 - -
Csa03g01150 1499 MobiDBLite consensus disorder prediction 1272 1292 - -
Csa03g01150 1499 Gene3D - 256 314 - -
Csa03g01150 1499 Gene3D Myosin VI head, motor domain, U50 subdomain 316 605 - -
Csa03g01150 1499 CDD MyosinXI_CBD 1101 1468 IPR037975 GO:0007015
Csa03g01150 1499 ProSiteProfiles IQ motif profile. 835 864 IPR000048 GO:0005515
Csa03g01150 1499 ProSiteProfiles IQ motif profile. 787 816 IPR000048 GO:0005515
Csa03g01150 1499 CDD MYSc_Myo11 76 724 IPR036018 -
Csa03g01150 1499 Gene3D - 443 627 - -
Csa03g01150 1499 Gene3D Kinesin motor domain 65 666 IPR036961 -
Csa03g01150 1499 Pfam Myosin N-terminal SH3-like domain 9 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 PANTHER MYOSIN-7 6 1497 - -
Csa03g01150 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 790 IPR027417 -
Csa03g01150 1499 Gene3D - 670 737 - -
Csa03g01150 1499 Coils Coil 920 954 - -
Csa03g01150 1499 ProSiteProfiles Dilute domain profile. 1150 1445 IPR002710 -
Csa03g01150 1499 ProSiteProfiles IQ motif profile. 812 839 IPR000048 GO:0005515
Csa03g01150 1499 Coils Coil 976 1010 - -
Csa03g01150 1499 Coils Coil 895 915 - -
Csa03g01150 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 887 IPR027417 -
Csa03g01150 1499 ProSiteProfiles Myosin motor domain profile. 62 736 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 Pfam Myosin head (motor domain) 64 724 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 ProSiteProfiles IQ motif profile. 762 791 IPR000048 GO:0005515
Csa03g01150 1499 Pfam IQ calmodulin-binding motif 836 851 IPR000048 GO:0005515
Csa03g01150 1499 Pfam IQ calmodulin-binding motif 859 879 IPR000048 GO:0005515
Csa03g01150 1499 Pfam IQ calmodulin-binding motif 789 808 IPR000048 GO:0005515
Csa03g01150 1499 Pfam IQ calmodulin-binding motif 765 782 IPR000048 GO:0005515
Csa03g01150 1499 SMART iq_5 761 783 IPR000048 GO:0005515
Csa03g01150 1499 SMART iq_5 786 808 IPR000048 GO:0005515
Csa03g01150 1499 SMART iq_5 857 879 IPR000048 GO:0005515
Csa03g01150 1499 SMART iq_5 809 831 IPR000048 GO:0005515
Csa03g01150 1499 SMART iq_5 738 760 IPR000048 GO:0005515
Csa03g01150 1499 SMART iq_5 834 856 IPR000048 GO:0005515
Csa03g01150 1499 Coils Coil 1018 1052 - -
Csa03g01150 1499 Pfam DIL domain 1321 1424 IPR002710 -
Csa03g01150 1499 Gene3D - 739 787 - -
Csa03g01150 1499 Gene3D - 788 836 - -
Csa03g01150 1499 Gene3D - 837 886 - -
Csa03g01150 1499 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 SMART MYSc_2a 56 737 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 PRINTS Myosin heavy chain signature 200 227 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 PRINTS Myosin heavy chain signature 486 514 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa03g01150 1499 SMART DIL_2 1320 1427 IPR002710 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01087 Csa-Chr1:6746292 Csa03g01150 Csa-Chr3:9010824 1.86E-07 dispersed
Csa03g01150 Csa-Chr3:9010824 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa03g04130 Csa-Chr3:36200613 Csa03g01150 Csa-Chr3:9010824 1.20E-171 transposed
Csa05g02081 Csa-Chr5:24121425 Csa03g01150 Csa-Chr3:9010824 0 transposed
Csa03g01150 Csa-Chr3:9010824 Csa06g00724 Csa-Chr6:5908642 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01150 K10357 - csv:101221506 2924.04