Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01153 ATGGATTCAGGGTTCTGCGCCGCTCAACTCTCTCAGCTTCTCGGCCCCAACACCACCAACGCCACCGCCGCTGCTAATTTCATCTGCGACCAATTCGCCACCGTCAGCAATAACTTTTCCGACACCAGAAATGCCCTTGATAATACCTACCTCCTCTTCTCCGCCTACCTCGTTTTCTCTATGCAACTCGGCTTTGCTATGCTCTGCGCTGGTTCTGTCCGCGCCAAAAACACTATGAACATTATGCTTACTAATGTCCTCGACGCCGCTGCGGGAGGCCTCTTTTATTACCTTTTTGGGTACGCCTTTGCATTCGGCTCCCCTTCTGGGGGCTTCATTGGTCGTCATAACTTTGGTCTCACCTCATTTCCGACCTCCACTGCTGATTACAGTGGTTTTCTTTACCAGTGGGCTTTTGCGATCGCTGCCGCTGGGATTACCAGTGGATCTATTGCTGAGCGGACTCAGTTTGTTGCCTATTTGATTTATTCTTCTGTTTTGACTGGATTTGTTTATCCGGTGGTTTCTCACTGGTTTTGGTCGCCTGATGGTTGGGCTGGGGTTATGAAATCGGATGGTCATTTGTTATTTGGGTCGGGAGTTATCGATTTCGCTGGCTCCGGAGTCGTTCATATGGTTGGGGGAATTGCTGGTCTATGGGGGGCGTTGATCGAAGGGCCGAGAATCGGTCGTTTTGATCACAATGGCCGGTCGGTTGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCACGAAGATTCTCGTCCCTTACACCACAGGAAACTTCTACGGCCAATGGAGCGCCGTCGGACGAACAGCAGTAACCACCACACTCGCCGGATGCACGGCGGCACTCACCACGCTTTTCGGGAAGCGATTCCTCTCAGGCCATTGGAACGTGACGGACGTTTGTAACGGACTCCTCGGCGGGTTCGCCGCCATCACCGCCGGCTGCTCCGTCGTCGAACCATGGGCAGCAATCATCTGCGGCTTTGTCGCCGCCATCGTACTGATAACCTGCAACCGAATAGCAGAGATAGTGAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGTGGGTGTGGCGCTTGGGGAGTGATCTTCACCGCACTCTTTGCAACAGAGGAGTATGTAACGGAAGTGTACGGCGGATCAGGGCGGCCCTACGGACTGCTGATGGGTGGCGGCGGGAGATTACTGGCAGCCCATTTAATACAGATATTGGTTATCGTGGGATGGGTGAGTGCAACGATGGGGCCATTGTTCTACGTTCTTCATAAGTTGAAGCTTCTTAGAATCTCCACTGAAGATGAAATGGCAGGGATGGATCTAACCCGACACGGAGGATTTGCTTATATATATCACGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTGGAACCAAAATCTTCAACTCCTACTGGTGATTATTGA 1503 51.83 MDSGFCAAQLSQLLGPNTTNATAAANFICDQFATVSNNFSDTRNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSGGFIGRHNFGLTSFPTSTADYSGFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGHLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHNGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAIVLITCNRIAEIVKYDDPLEAAQLHGGCGAWGVIFTALFATEEYVTEVYGGSGRPYGLLMGGGGRLLAAHLIQILVIVGWVSATMGPLFYVLHKLKLLRISTEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSSTPTGDY* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9037503 9039285 - CsaV3_3G011530.1 Csa03g01153 522058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01153 500 TIGRFAM amt: ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa03g01153 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa03g01153 500 PANTHER AMMONIUM TRANSPORTER 6 494 - -
Csa03g01153 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa03g01153 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Csa03g01153 500 SUPERFAMILY Ammonium transporter 44 452 - -
Csa03g01153 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01000 Csa-Chr2:9652408 Csa03g01153 Csa-Chr3:9037503 0 dispersed
Csa03g01153 Csa-Chr3:9037503 Csa03g03043 Csa-Chr3:28760862 1.14E-17 dispersed
Csa06g03370 Csa-Chr6:28054966 Csa03g01153 Csa-Chr3:9037503 8.45E-17 transposed
Csa03g01153 Csa-Chr3:9037503 Csa03g02642 Csa-Chr3:24916558 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01153 K03320 - csv:101208366 943.34