Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01156 ATGATTTCCTCACTGATTTCCCCCAATTTCCCATTTCCTTCTCTTAAATCCAACTTTGCTCGACCTAAGACATCTCTCTCTTTTCACAAACCCGTCCTCTGTTTCCACCATCGAAACCCCAATATCTTTGAAAACCCGTCAAAACCCATTGCCATTTTCATCAAAACGGTTCTAGAGAGCAACCCAGATCGTGTTTTGTTCAGAGAAGTGAAGAAAAGAGAAGGGAATGGTGGAAGAAGAGGTGTTTCTCTTGTGGGTAGCAATCAAATGTTGCTACTCTGTGGACTGGGCTATTGGGTTCAGGGGTTTAGGTGCTTCCCATGGCTGGCTCTTAACTTCCATATGGCTCATTATCTTAATCTTCATCCTTCCTTATTGCAACTTGTCCAGAACTCTGGAAATCTTCCTATGGTTGCTAAACCCTTGTATGGAATTCTCTCTGATGCTTTGTATATTGGTGGAGCTCGTAGAGTTCCTTACATTTCAATTGGAGTGCTCTTGCAGGTTCTATCTTGGGGATCTCTGGCATTGATACCTGTGGCAGGTGAAGCTCTTCCTGCTTTAATGGCATGTGTTCTTCTAAGTAATCTTGGAGCATCCATAACAGAAGTTGCAAAAGATGCACTTGTCGCAGAATATGGTCAAACAAACAAAATTTGTGGCCTTCAATCTTATACATTCATGGCTTTAGCTGTTGGTGGAGTCTTGGGCAATTTCATTGGTGGATATAACTTACTGAGTTCACCACCTAGAAAAATGTTTCTTCTGTTTTCCATTCTACTTTCTCTCCAACTTTCAGTTTCATTAGCAACAAGAGAGGAATCTCTAGGTTTGCTGCAACTTCCAGAGCCAGATGTTCAGGGGAAATCAATCATGGAAAATGTTAGAAATCAGATATCTGAGCTTGTAACTGTTATTAGCGATCCAAGCGTATCTCGCCCACTGGCTTGGATTGTAGCTTCTATTGCTATAGTCCCTCTTCTATCCGGCTCTATCTTTTGCTATCAAACACAATGCCTTAATCTTGATCCTTCCATAATTGGAATGTCTAGAGTTGTAAGCCAATTGGTTCTTCTTTCTGTCACCGTACTTTACGACCGCCATTGGAAAAGAGTTCCTATGAAGAAGTTAATTGGCATGGTGCAGATATTGTATGCCCTTTCCTTTCTCCTTGATATTGTTTTGATGAAACAGATAAATCTGAAGTTGGGCATTTCCAATGAGTTGTTTGCTCTTTGCTTTTCGGGTTTGGCCGAAACCATTGCACAGTTTAAGCTTTTACCATTTTCTGTGCTCTTTGCAAGCTTAAGTCCAAAAGGTTGTGAAGGATCTCTGATTTCATTTTTCGCATCGGCCGTGTGCTTGTCTTCCATAGTTAGTGGTTTTTTGGGTATTGGGTTGGCTTCTTTGATTGGAATAGGATCAGGAAACTACTCAAGCTTGCCTGTGGGGATTTTGATACAGTTCATAGCAGCTTTATTTCCATTAACCTGTATCCATTTTGTTCCCATGAAGTCACCGGTACTTGAAAGAGAAAAGAAGAGAGTAATGAGTAGAAGATCTCGTAAAAATAGAAGGGTCGGACGTGTCATGTATAGCGGTTCTGTATGTGCTTATCGACGTGAGAGAGAATCCGAGATTCAGGGGTGA 1650 41.33 MISSLISPNFPFPSLKSNFARPKTSLSFHKPVLCFHHRNPNIFENPSKPIAIFIKTVLESNPDRVLFREVKKREGNGGRRGVSLVGSNQMLLLCGLGYWVQGFRCFPWLALNFHMAHYLNLHPSLLQLVQNSGNLPMVAKPLYGILSDALYIGGARRVPYISIGVLLQVLSWGSLALIPVAGEALPALMACVLLSNLGASITEVAKDALVAEYGQTNKICGLQSYTFMALAVGGVLGNFIGGYNLLSSPPRKMFLLFSILLSLQLSVSLATREESLGLLQLPEPDVQGKSIMENVRNQISELVTVISDPSVSRPLAWIVASIAIVPLLSGSIFCYQTQCLNLDPSIIGMSRVVSQLVLLSVTVLYDRHWKRVPMKKLIGMVQILYALSFLLDIVLMKQINLKLGISNELFALCFSGLAETIAQFKLLPFSVLFASLSPKGCEGSLISFFASAVCLSSIVSGFLGIGLASLIGIGSGNYSSLPVGILIQFIAALFPLTCIHFVPMKSPVLEREKKRVMSRRSRKNRRVGRVMYSGSVCAYRRERESEIQG* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9048617 9051007 + CsaV3_3G011560.1 Csa03g01156 522061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01156 549 Gene3D MFS general substrate transporter like domains 88 535 IPR036259 -
Csa03g01156 549 TIGRFAM fbt: folate/biopterin transporter 166 525 IPR004324 GO:0016021
Csa03g01156 549 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 40 547 IPR039309 -
Csa03g01156 549 SUPERFAMILY MFS general substrate transporter 90 494 IPR036259 -
Csa03g01156 549 Pfam BT1 family 101 514 IPR039309 -
Csa03g01156 549 PANTHER FOLATE-BIOPTERIN TRANSPORTER 9, CHLOROPLASTIC-RELATED 40 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01156 - - - csv:101208607 1016.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02775 Csa-Chr2:24140676 Csa03g01156 Csa-Chr3:9048617 4.54E-115 dispersed
Csa03g01156 Csa-Chr3:9048617 Csa07g01154 Csa-Chr7:11357863 3.01E-26 dispersed
Csa03g01156 Csa-Chr3:9048617 Csa03g01316 Csa-Chr3:10026259 6.64E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g806 . . . . . . . . . . . Cma14g01853 . Car14g01660 . . Cpe03g01552 . . . . . . . . . . . . . . . . Cone7ag0358 Cone4ag0370 Lsi05g01781 . . Cme06g00440 . Blo07g00290 Bda11g00652 . . Bpe13g00535 . . . . Cmo14g01898 . . . . . . . . . . . . . Cla05g00399 Cam05g0435 Cec05g0441 Cco05g0440 Clacu05g0430 Cmu05g0411 Cre05g0472 . Csa03g01156 Chy06g00419 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010245 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01156 Csa_Chr03 FPKM 1.786427 2.162987 4.114917 4.298636 0.629694 0.152285 0.348334 1.819761 1.237409 1.99034