Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01161 ATGGAAATATCCATCTATGTCGATGTGGCATTGTGGCGGGAAGTATCGGAAACCAAGGGTTTTCTGTTCCGGCGACGACGAGTTACAAACACCCTCCTCATTTCAAACCAAAACGCTTTAAAACTTCCAATCACAACAAGATTGAAGCTCACAAACCATCCATTTTTATCCACCGCCATGTACTGGGCGGCAACACGAACCGTTGTTTCTGCTTCCCGGTGGCGTTTTCTGGCTCTTTTGATTCGCTTCCCTCCGCGTAACTTCACCTCAGTTACTCATTCGCCGGCATTTATAGAAAGGCAACAGCTTGAAAAGTTGCACTGTTGGAAAAGCAGAAAAGGTTCAAGAGGAAGCATCAAAGCTGCTAAGAAGTTTAAGGATAATAATATTCTCCAAGACAATAAGTTTCTTTCTCACATTTTATGGTGGAAAGAGACGGTGGAATCATGCAAGAAGCCGTCATCTGTCCAGCTGGTTAAGAGGCTTGACTTTTCCAACTTGCTAGGTTTAGATACAAACCTGAAAAATGGGAGTCTTAAAGAAGGAACTCTTAACTGTGAGATTCTACAGTTCAAGGCAAAGTTTCCTCGAGAAGTTTTGCTCTGTAGAGTTGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTGGAATATGCTGGTTTAAATCCTTTTGGAGGTCAGCGTATGGATAGTATTCCAAAAGCTGGTTGCCCCGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACACGCAATGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAGGGCCCAATTCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCAGGCAGTCCCTATGTTTTTGGGCTTGTCGGGGTTGATCACGATCTTGACTTTCCAGAACCGATGCCTGTGATTGGAATATCTCGATCCGCAAGGGGCTATTGCATGAGCCTTGTCATAGAGACCATGAAGACATATTCATCAGAGGATGGTTTGACAGAAGAGGCCTTAGTTACTAAACTGCGCACTTGTCAATACCATCATTTATTTCTTCACACGTCATTAAGGAACAACTCCTCAGGCACTTGCCGCTGGGGTGAATTTGGTGAGGGTGGCCGGCTATGGGGGGAATGTAATCCCAGACATTTTGAGTGGTTCGATGGAAAGCCTCTTGATAATCTTATTTCTAAGGTTAAAGAGCTTTATGGTCTTGATGATGAAGTTACATTTAGAAATGTTACAATATCGTCAGAAAATAGGCCACATCCGTTAACTCTAGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTGCTGAAGGTTTTGCTTCCATCCAATTGTGCTGGCCTTCCTGCATTGTATATGAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGACTGCATCGACTATTCAAGCTATATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCCCCAGCCAAGCTTGTGAAGTTATTGGAAACGAGGGAGGCGAATCATATTGAATTCTGTAGAATGAAGAATGTACTTGACGAAATATTACAAATGCACAAAAATTGCAAGCTAAACAATATCCTGAAATTGCTGATGGATCCTGCATCTGTGGCAACTGGGTTGAAAATTGACTATGATACATTTGTCAACGAATGTGAATGGGCTTCCAGTAGAGTTGATGAAATGATTTTTCTTGGTAGTGAAAGTGAAAGTGATCAGAAAATCAGTTCTTATCCTATTATTCCTAATGGTTTTTTCGAGGACATGGAATTTTCTTGGAAAGGTCGTGTGAAGAGGATTCACATTGAAGAATCTTGTACAGAAGTTGAACGGGCAGCTGAAGCACTCTCCCTTGCAGTTACTGAAGATTTTGTCCCAATCATTTCTAGAATCAGGGCTACTAATGCACCACTAGGAGGTCCAAAGGGAGAAATATTATATGCTCGGGACCATCAATCTGTCTGGTTCAAAGGAAAACGGTTTGCACCATCTGTATGGGCTGGAAGCCCTGGAGAAGCAGAAATTAAACAACTGAAACCTGCTCTTGATTCAAAGGGAAAAAAAGTTGGGGAGGAGTGGTTTACCACGAAGAAGGTGGAGGATTCTTTAACAAGGTACCAAGAGGCCAATACCAAAGCAAAAGCAAAAGTAGTAGATCTGCTGAGGGAACTTTCTTCTGAATTGTTAGCTAAAATTAACGTCCTAATATTTGCTTCCATGCTACTCATAATTGCCAAGGCGTTATTTGCTCATGTGAGTGAAGGGAGGAGGAGGAAATGGGTTTTTCCCACCCTTGCTGCACCCAGTGATAGGTCCAAGCAGGGCATAAAATCATTGGAGGGGAAAGTTGCGATGAAGCTGGTTGGTCTATCTCCCTATTGGTTTGATGTTGTCGAAGGCAATGCTGTGCAGAATACTATTGAGATGGAATCATTATTTCTTTTGACTGGTCCAAATGGGGGTGGAAAATCTAGTTTGCTTCGATCGATTTGTGCTGCTACTTTGCTTGGGATATGTGGATTTATGGTACCGGCAGAGTCCGCCCTGATTCCCCACTTCGACTCAATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGAAAAAGTTCTTTTCAGGTGGAAATGTCAGAGATGAGATCCATTGTCAATAGAGTAACGGAGAGAAGTCTTGTACTTATCGATGAAATCTGTCGTGGAACAGAAACAGCAAAAGGAACTTGTATTGCCGGGAGCATTATTGAAGCTCTTGATAAAGCAGGTTGTCTTGGCATTGTCTCCACTCACTTGCATGGAATATTTGATTTGCCTTTAGATACCCAAAACATTGTGTACAAAGCAATGGGAACTGTTTCTGCGGAAGGACGCACGGTTCCCACTTGGAAGTTGATTAGTGGAATATGTCGAGAGAGCCTTGCCTTTGAAACAGCAAAGAATGAAGGAATCTCTGAAGCTATAATTCAAAGGGCTGAAGATTTGTATCTCTCAAATTATGCTAAAGAAGGGATTTCAGGAAAAGAGACGACAGATCTGAACTTTTTTGTTTCTTCTCATCCAAGCCTTAATGGTAATGGCACTGGAAAATCCAATCTCAAGTCAAACGGTGTGATTGTAAAGGCTGATCAGCCAAAAACAGAGACAACTAGCAAAACAGGTGTCTTGTGGAAGAAACTTGAGAGGGCTATCACAAAGATATGCCAAAAGAAGTTGATAGAGTTTCATAGAGATAAAAACACATTGACACCTGCTGAAATTCAATGTGTTCTAATTGATGCAAGAGAGAAGCCACCTCCATCAACAATAGGTGCTTCGAGCGTATATGTGATTCTTAGACCGGATGGCAAATTCTATGTTGGACAGACTGATGATCTGGATGGTAGGGTCCAATCACATCGTTTAAAGGAAGGAATGCGGGATGCTGCATTCCTTTATCTTATGGTGCCTGGGAAGAGCTTAGCTTGCCAACTTGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTCCAGCTAACTAACGTTGCTGATGGAAAGCATCGGAATTTTGGCACAGCCAATCTCTTATCCGACAATGTGACTGTTTGCTCATGA 3636 42.38 MEISIYVDVALWREVSETKGFLFRRRRVTNTLLISNQNALKLPITTRLKLTNHPFLSTAMYWAATRTVVSASRWRFLALLIRFPPRNFTSVTHSPAFIERQQLEKLHCWKSRKGSRGSIKAAKKFKDNNILQDNKFLSHILWWKETVESCKKPSSVQLVKRLDFSNLLGLDTNLKNGSLKEGTLNCEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPIQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVIGISRSARGYCMSLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNPRHFEWFDGKPLDNLISKVKELYGLDDEVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYMRDLLLNPPAYETASTIQAICRLMSNVTCAIPDFTCFPPAKLVKLLETREANHIEFCRMKNVLDEILQMHKNCKLNNILKLLMDPASVATGLKIDYDTFVNECEWASSRVDEMIFLGSESESDQKISSYPIIPNGFFEDMEFSWKGRVKRIHIEESCTEVERAAEALSLAVTEDFVPIISRIRATNAPLGGPKGEILYARDHQSVWFKGKRFAPSVWAGSPGEAEIKQLKPALDSKGKKVGEEWFTTKKVEDSLTRYQEANTKAKAKVVDLLRELSSELLAKINVLIFASMLLIIAKALFAHVSEGRRRKWVFPTLAAPSDRSKQGIKSLEGKVAMKLVGLSPYWFDVVEGNAVQNTIEMESLFLLTGPNGGGKSSLLRSICAATLLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIVNRVTERSLVLIDEICRGTETAKGTCIAGSIIEALDKAGCLGIVSTHLHGIFDLPLDTQNIVYKAMGTVSAEGRTVPTWKLISGICRESLAFETAKNEGISEAIIQRAEDLYLSNYAKEGISGKETTDLNFFVSSHPSLNGNGTGKSNLKSNGVIVKADQPKTETTSKTGVLWKKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTANLLSDNVTVCS* 1212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9074473 9091164 - CsaV3_3G011610.1 Csa03g01161 522066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01161 1211 ProSitePatterns DNA mismatch repair proteins mutS family signature. 905 921 IPR000432 GO:0005524|GO:0006298|GO:0030983
Csa03g01161 1211 Gene3D DNA repair protein MutS, domain I 171 283 IPR016151 GO:0005524|GO:0006298|GO:0030983
Csa03g01161 1211 Coils Coil 717 737 - -
Csa03g01161 1211 Pfam MutS domain V 828 1008 IPR000432 GO:0005524|GO:0006298|GO:0030983
Csa03g01161 1211 CDD ABC_MutS_homologs 814 997 - -
Csa03g01161 1211 SUPERFAMILY GIY-YIG endonuclease 1119 1182 IPR035901 -
Csa03g01161 1211 SMART mutATP5 824 1010 IPR000432 GO:0005524|GO:0006298|GO:0030983
Csa03g01161 1211 SUPERFAMILY DNA repair protein MutS, domain I 179 287 IPR016151 GO:0005524|GO:0006298|GO:0030983
Csa03g01161 1211 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 226 1161 - -
Csa03g01161 1211 Pfam MutS domain I 189 278 IPR007695 GO:0005524|GO:0006298|GO:0030983
Csa03g01161 1211 Gene3D - 802 1065 IPR027417 -
Csa03g01161 1211 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 226 1161 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Csa03g01161 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 814 1008 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01161 - - - csv:101209091 2310.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01161 Csa-Chr3:9074473 Csa07g01904 Csa-Chr7:18938382 2.10E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01161 Csa_Chr03 FPKM 0.0 0.0 1.389352 0.777117 2.8633 2.664283 2.662445 0.160108 0.0 0.0