Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01162 ATGGAACCACCTCTAGGTTTAATGCCTACCACCGGCATTGCCAGCGCTGGCGGCTCTTCCGGCGCCTCCAATGATGAGAATTCTGTTTCCAAAGCTAAGGAGTTGAACACCCACCAGACAGATTTGTCTTCTGAGGAGTTTTCTTCTCCCCCTGTTGAAGCTGAGCTCGAATTAGGCCTAGGGCTCAGTCTTGGAAATGGGGTTTCTGCAGGAAAGGGAAAACAGGGTCTTTGGGGTGAACGCGGCCGGATATTGACGGCGAAAGATTTTCCTTCGGCCATCTCTCCTGGTGGGTCGTCTTCTTCTTCTTCGGCTAGATTCTCTGGCAGACCTGTTGCTATTTCTGGTGTCAAGAGGGCGGCGGAACCTGTTTCCCATGACGGCGGTTCTTCTCCTCCGGCTGTCAGTCAGGTGGTGGGATGGCCGCCCATAAGAGCTTATAGAATTAACAGCCTGATTAACCAAGCTAAAAATCAGAGGGCTGGGGATGAAAAGGAGCTGCTTTCTCTCAAAAATAGGTCCAATGGTGTTTCAGAGAAGATCCAGGATGGCAAAAATACAAGTGCCACTGATACTGTAAAGGGCCCTGTAGGTTTTGTGAAAGTGTATATGGACGGAGTTCTAATTGGCAGGAAAGTGGACTTGAATGCCCATTCTTGCTATGAGACTTTGGCTCTGATGCTCGAGGACATGTTTTTTAAGTCTACAGGAAGTGTCCCATCCACCGGCTTGAATGGAGGTCAGGATGAACAAGCACCAAAACTCTCAAAACTTCTGACTGGCTCCTCTGAGTTTGTGCTCACCTATGAAGATAAAGAGGGAGACTGGTTGTTGGTTGGGGATGTTCCTTGGAGGATGTTCCTTGGCTCGGTTAAGAAACTTCGAATCATGAGGACATCTGAGGCAAAGGGACTTGCCCCCCATCCCAAAGAAAGAAAGAAAGAAAGAAATCATCTTATACAATGCTACCCTACAGGCTTATGA 984 48.48 MEPPLGLMPTTGIASAGGSSGASNDENSVSKAKELNTHQTDLSSEEFSSPPVEAELELGLGLSLGNGVSAGKGKQGLWGERGRILTAKDFPSAISPGGSSSSSSARFSGRPVAISGVKRAAEPVSHDGGSSPPAVSQVVGWPPIRAYRINSLINQAKNQRAGDEKELLSLKNRSNGVSEKIQDGKNTSATDTVKGPVGFVKVYMDGVLIGRKVDLNAHSCYETLALMLEDMFFKSTGSVPSTGLNGGQDEQAPKLSKLLTGSSEFVLTYEDKEGDWLLVGDVPWRMFLGSVKKLRIMRTSEAKGLAPHPKERKKERNHLIQCYPTGL* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9091821 9094990 - CsaV3_3G011620.1 Csa03g01162 522067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01162 327 MobiDBLite consensus disorder prediction 89 108 - -
Csa03g01162 327 MobiDBLite consensus disorder prediction 13 47 - -
Csa03g01162 327 MobiDBLite consensus disorder prediction 1 52 - -
Csa03g01162 327 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 312 IPR003311 GO:0005634|GO:0006355
Csa03g01162 327 ProSiteProfiles PB1 domain profile. 197 301 IPR000270 GO:0005515
Csa03g01162 327 Gene3D - 194 309 - -
Csa03g01162 327 Coils Coil 153 173 - -
Csa03g01162 327 MobiDBLite consensus disorder prediction 93 108 - -
Csa03g01162 327 Pfam AUX/IAA family 115 307 IPR033389 -
Csa03g01162 327 SUPERFAMILY CAD & PB1 domains 191 297 - -
Csa03g01162 327 PANTHER AUXIN-RESPONSIVE PROTEIN 40 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01162 K14484 IAA; auxin-responsive protein IAA - csv:101223006 552.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01024 Csa03g01162 CCT
Csa02g01024 Csa03g01162 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00631 Csa-Chr2:4666821 Csa03g01162 Csa-Chr3:9091821 1.70E-10 dispersed
Csa03g01162 Csa-Chr3:9091821 Csa02g02232 Csa-Chr2:20037726 6.11E-39 dispersed
Csa05g02642 Csa-Chr5:27469623 Csa03g01162 Csa-Chr3:9091821 2.00E-20 dispersed
Csa02g01024 Csa-Chr2:9951727 Csa03g01162 Csa-Chr3:9091821 2.32E-86 wgd
Csa03g01162 Csa-Chr3:9091821 Csa03g02631 Csa-Chr3:24818410 5.05E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002822 3 4 0 2 1 1 2 2 2 2 1 2 1 2 2 2 1 2 2 1 2 2 2 2 2 1 2 3 3 2 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31167 PF02309 AUX_IAA 5.30E-59 CL0072 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01162 Csa_Chr03 FPKM 159.214691 151.458359 210.162308 201.684525 74.12973 56.580772 64.173645 244.244675 272.71109 224.643295