Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01164 ATGTTGCACTCTACAGCTTCGTTTTCCATTTACACTGATGATGAAAATCAAGAACAAATCATGGGGTTAGAAGCGTTTGAGAAGGGTGTTATGATTGAAGTGAACAAAGAAGAAGTTCTGGGTAGTACTGGTCATGATTTCAGTTTTTCTGAAAGGGCTATGGGGTTGATTCAAGAGGAAGAAATGGAAGATGAAGATGGTCTAAACCGGGGTTTTGACGACAGTGAGGTTAACCTTAGACCCGCGAGTCCTCCGCTCTATTTAGCGGCGGGTCTTGGAATGGATGCATCTGGTCTTGGGGGTGGGTATGATTCTGTTGATTTCTTTGACGAGAAGATGGTGGATGAGACGCCCTCAATCCATCCTTCGTTGTCTCTTAGGGACTATGTGCAGTCTTTATGGTCCGAGGGAAAACTTGATGAAGCTGAGGAACAGTGCTATCAAGCTACAATAACATTTCCTGAAGATGGTGAAACTCTGATGCTATATGCTCAGTTGGTTTGGGAACTCCATCACGATCAAGCTAAAGCTTCAAGTTACTTTGAACGTGCAGCTCTTGTTGCTCCAAATAACAGCAATATTCTTGCAGCACGAGCTAAATTCCTGTGGGAACTGAATGAGGAGGATGAGACTATGATACCAGGTGAAGAAGACAGCAACCCCGTTGATAGTTCATCCCCTGAAGAAAGAATTGAACCGGCACCTGACACGGGTGAGAGTGATATGCAGGAGTATTATGAGAAGATGCTGAAGGAGAACCCTACTGATCCATTGCTTCTGAAAAACTACGCACGGTTCTTGCAACAGTCCAAAGTAGACCTCCAAGGAGCAGAGGAATACTACTACCGTGGCATCCAAGCAGACCCAAGCGATGGGGAATTGCTATCAGAATATGCAAAACTGGTGTGGGAGCTTCATCATGACTACAATAAAGCATTAAATAACTTCGAGAGAGCAGTTGAAACCTCCCCTACAAACAGCTATGTTCTTGGAGCTTATGCAAGCTTCCTTTGGGAGACGGACGAACACGAGGAAGATGGGGCAAGCAAAAATGACTCTCAATGGCCTTCAAACACCGTGGCAGTTTCTGTAGGAAATGCTTGA 1104 44.93 MLHSTASFSIYTDDENQEQIMGLEAFEKGVMIEVNKEEVLGSTGHDFSFSERAMGLIQEEEMEDEDGLNRGFDDSEVNLRPASPPLYLAAGLGMDASGLGGGYDSVDFFDEKMVDETPSIHPSLSLRDYVQSLWSEGKLDEAEEQCYQATITFPEDGETLMLYAQLVWELHHDQAKASSYFERAALVAPNNSNILAARAKFLWELNEEDETMIPGEEDSNPVDSSSPEERIEPAPDTGESDMQEYYEKMLKENPTDPLLLKNYARFLQQSKVDLQGAEEYYYRGIQADPSDGELLSEYAKLVWELHHDYNKALNNFERAVETSPTNSYVLGAYASFLWETDEHEEDGASKNDSQWPSNTVAVSVGNA* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9098028 9102280 + CsaV3_3G011640.1 Csa03g01164 522069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01164 367 Gene3D Tetratricopeptide repeat domain 111 213 IPR011990 GO:0005515
Csa03g01164 367 MobiDBLite consensus disorder prediction 351 367 - -
Csa03g01164 367 Gene3D Tetratricopeptide repeat domain 238 348 IPR011990 GO:0005515
Csa03g01164 367 MobiDBLite consensus disorder prediction 223 240 - -
Csa03g01164 367 SUPERFAMILY TPR-like 244 345 IPR011990 GO:0005515
Csa03g01164 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 3 111 - -
Csa03g01164 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 229 351 - -
Csa03g01164 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 109 216 - -
Csa03g01164 367 MobiDBLite consensus disorder prediction 211 240 - -
Csa03g01164 367 MobiDBLite consensus disorder prediction 343 367 - -
Csa03g01164 367 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 109 216 - -
Csa03g01164 367 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 111 - -
Csa03g01164 367 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 229 351 - -
Csa03g01164 367 SUPERFAMILY TPR-like 131 210 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01164 - - - csv:101202732 733.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00196 Csa-Chr2:1339652 Csa03g01164 Csa-Chr3:9098028 2.14E-13 dispersed
Csa03g01164 Csa-Chr3:9098028 Csa03g04595 Csa-Chr3:39984549 1.87E-13 dispersed
Csa03g01164 Csa-Chr3:9098028 Csa06g00737 Csa-Chr6:6016556 4.39E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g786 . . . . . . . . . . . Cma14g01846 . Car14g01654 . . Cpe03g01546 . . . . . . . . . . . . . . . . Cone7ag0353 . Lsi05g01776 . . Cme06g00446 Blo02g00686 . . . . . . . . . Cmo14g01890 . . . . . . . . . . . . . Cla05g00404 Cam05g0441 Cec05g0448 Cco05g0449 Clacu05g0438 Cmu05g0416 Cre05g0478 . Csa03g01164 Chy06g00426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009424 0 1 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01164 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0