Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01174 ATGGTGAAAATGCAAGACTATGGGAAATGTCCTGTTACAGGCGAACCACTTTCCATTGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGTATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTATCCAATTTTGCATTAGAACAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAAAGGGATGAGGCTAGGTCCCTGCTTGCTCTGGCAGAGAGGCAGATGCCTTTGTCATCAACCTCATTTTCTTCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGACGCTGTTATCTCTGAGCTCACAGAATGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTGCCACGTTGGTTCCTGTTGAGGCTCTAGAAAATTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCGGGCATTATGTCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCGAAGAAGGTAACTAGTGTCAAATTTGTGGGCCGAGATGATCTATTCTTGACTGGTTCGGCTGATAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATGACTTCTTTGTTACCGCCTCCCTTGATAACACATGGTGTTTTTATGAACTTGCTTCAGGATTATGCCTGACCCAGGTTGCTGAGGATTCAGAAACAGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTTATCCTTGGAACAGGCACGTCAGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAACGTGGCCAAATTCGATGGACATGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCATATGATTCAGACACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTCGCGATTGCTGGCTCAGACATAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTCTTCCAGATTTGTCTGGCACAGGGAAAGCAACTTGTCTTAAATTTGGACCGGATGCAAAATACTTAGCCGTTGGGTCAATGGATCGGAATCTTCGAATTTTTGGTGTGCCTGGGGAAGATGGCGCCATGGAGACATGA 1485 44.11 MVKMQDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLALAERQMPLSSTSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISDAVISELTECNAALSQQRKRRQIPATLVPVEALENYTQISSHPLHKTSKPGIMSLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNDFFVTASLDNTWCFYELASGLCLTQVAEDSETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSDTPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTLPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGAMET* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9132686 9139307 - CsaV3_3G011740.1 Csa03g01174 522079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01174 494 Coils Coil 85 105 - -
Csa03g01174 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 403 IPR001680 GO:0005515
Csa03g01174 494 Gene3D - 171 485 IPR015943 GO:0005515
Csa03g01174 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 264 IPR001680 GO:0005515
Csa03g01174 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 32 IPR013083 -
Csa03g01174 494 PANTHER PRE-MRNA-PROCESSING FACTOR 19 5 493 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Csa03g01174 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 362 IPR001680 GO:0005515
Csa03g01174 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 264 - -
Csa03g01174 494 Pfam WD domain, G-beta repeat 358 394 IPR001680 GO:0005515
Csa03g01174 494 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Csa03g01174 494 Pfam WD domain, G-beta repeat 445 483 IPR001680 GO:0005515
Csa03g01174 494 SUPERFAMILY WD40 repeat-like 193 483 IPR036322 GO:0005515
Csa03g01174 494 CDD WD40 196 483 - -
Csa03g01174 494 Pfam Prp19/Pso4-like 36 99 IPR013915 -
Csa03g01174 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 356 - -
Csa03g01174 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 396 - -
Csa03g01174 494 SMART WD40_4 443 484 IPR001680 GO:0005515
Csa03g01174 494 SMART WD40_4 397 436 IPR001680 GO:0005515
Csa03g01174 494 SMART WD40_4 180 222 IPR001680 GO:0005515
Csa03g01174 494 SMART WD40_4 270 309 IPR001680 GO:0005515
Csa03g01174 494 SMART WD40_4 312 353 IPR001680 GO:0005515
Csa03g01174 494 SMART WD40_4 356 394 IPR001680 GO:0005515
Csa03g01174 494 SMART WD40_4 225 264 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01174 Csa-Chr3:9132686 Csa06g02234 Csa-Chr6:20117153 3.40E-29 dispersed
Csa03g01174 Csa-Chr3:9132686 Csa07g01715 Csa-Chr7:17626903 8.11E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01174 K10599 - csv:101204424 980.704