Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01176 ATGGAACAAACATCTGTTGATGCTCGGAAAAATCTACGAAGTAAAATCGGTTCTTTCTGTGGTAGAAACAAAGACGAGGAGAATTTAGAAAATGGTGATTTGGGTCTGTCAAAGTACTCAATATCAAGAGGGTTGAATAAGAAGTTAATGCTGCCTCATGCATTGTATTTGAAGTTGAAGCAAAACCGAATCAGTAGAAGCTATGTGCATGATTCATTTTTTAACTGTAACATAGGGTTAGACTATAAGGTTCCGAAGTATATGGTGACTATAGATGAGAAATATCTTCGACGATGTTTGGAACTGATTCAGACTAGTGCATTGAAGGCTGCACGTTGTAACGAATCTATAAGCCTTAGCTCTGTGAAGACGGGTGCTTTGACTGAAAGCTTGAGTGTTGATAAATTGCAAACGAGAGGGATGGCTCATATGGAAAGATTCATTATCACGTGCCCTTCAGCAGGCGAGGATAGCAATACAGTCCTAAGCTCGAACAAAATGTGGTTTGTTGGTTCAATTATGGGAAGCAAGAGCATGATCAACATATTGAAGAGTCCTTTATTGCATCAACTCGGTATCACAGAAGAAACTTCAAACTTGATAAGAATGGACCTGAATGATATCAAAGGCTTCACTGGCAGCAATTTTATGGATTCTCCTGGTGATGTGGATATATCTTCATTGAAGAATCTAGACAACACAAAACCGGAAAGCCATCAAGATGGATCTGATGCAGCAAACGAGAGGTTTTTCTCCACACCCAGCAGAAATTCTTTATGTTCTGATCAGTCTTCTTCGGGCTCAGCCTCCACATCACTTTGTCAAGGTATGCTTCAGTTTACATGGAAGGATGGAAGTCCTTATTTCATCTTCTCTGTAGACGATGAGAAGGAAGTCTATGTGGCTAGCTCATCAAAGGTCACATCGGCAGATAATAACGCTTTGGACTATGTTTATTTGTTCTGTTCTGCAAAGAGCGGTCTTAAGGATCATGAGGTTAGAAATAGCAGACCCTGTATTGTTGGCAAGATGACGGTGTCAACTTCCTATGGTGTCTGTTCGAATAATTCGAAAATTGCAGATACTGAATTTGTGTTGTTTGGTGGTATTGAAAATTCTGACTTAGAGATTAGTCCTTCAAACACTGTCCTCAAGAAGAATAAGGTATTTCCAAGGAAGGTGGCTGAAGTATTTAGGACAAGTAACTCATCTAAACATAGAAACATACCCAATTTGAATAGATCTAGTGTCATGAAGGATTTTTGTCCTTGGGAACCATACTCAGATAAACTAAACAGCTCCGATGACTTAATTTGTGCTCGTGATCTTCCTCCCAATCTTGAATTGGCTGCCATTGTTGTGAGAGACCATCTCCCAGAAGATCATGGCAGTAGAGTTGGAGGTTGGGGTTTAAAGTTTCTCAAACAGGCCAAGGCCAAACAAACAAACAATTCACTGGATACTTCAGTGCAGGCTGACTGTTGTGTACGAAACAGTGGAAAATGTTCGACGAGCATGGACATTCTCATCCCTGCTGGTCTCCATGGCGGGCCTAGAACAAGGAATGGAGGTCCTTCCACCCTCAAGGAGCGGTGGAAATCGGGTGGAGTATGTGATTGTGGTGGTTGGGACATAGGATGTCCTCTAACAATACTTGAAGGCCAATCGGTCAACGATGATACTTTACGCCAAGCAGACACGCAAGAGTGCAGGGCATTTAACATACATGCTAAGGGTTATGAGAATAGTCCTCCAACATTGAGGATGGTGAACATCCGCGACGGCTTGTACTTTGTTCATTTTCAACCAAAACTATCTTCTCTGCAATGTTTCTCGATTGCAGTGGCGATTGTCCATTCAAGAAGTCCCAGTCTCAAGCCTCGAAATGTACAGGAGTTAAAATAG 1905 41.57 MEQTSVDARKNLRSKIGSFCGRNKDEENLENGDLGLSKYSISRGLNKKLMLPHALYLKLKQNRISRSYVHDSFFNCNIGLDYKVPKYMVTIDEKYLRRCLELIQTSALKAARCNESISLSSVKTGALTESLSVDKLQTRGMAHMERFIITCPSAGEDSNTVLSSNKMWFVGSIMGSKSMINILKSPLLHQLGITEETSNLIRMDLNDIKGFTGSNFMDSPGDVDISSLKNLDNTKPESHQDGSDAANERFFSTPSRNSLCSDQSSSGSASTSLCQGMLQFTWKDGSPYFIFSVDDEKEVYVASSSKVTSADNNALDYVYLFCSAKSGLKDHEVRNSRPCIVGKMTVSTSYGVCSNNSKIADTEFVLFGGIENSDLEISPSNTVLKKNKVFPRKVAEVFRTSNSSKHRNIPNLNRSSVMKDFCPWEPYSDKLNSSDDLICARDLPPNLELAAIVVRDHLPEDHGSRVGGWGLKFLKQAKAKQTNNSLDTSVQADCCVRNSGKCSTSMDILIPAGLHGGPRTRNGGPSTLKERWKSGGVCDCGGWDIGCPLTILEGQSVNDDTLRQADTQECRAFNIHAKGYENSPPTLRMVNIRDGLYFVHFQPKLSSLQCFSIAVAIVHSRSPSLKPRNVQELK* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9149726 9153529 + CsaV3_3G011760.1 Csa03g01176 522081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01176 634 MobiDBLite consensus disorder prediction 227 248 - -
Csa03g01176 634 PANTHER EXPRESSED PROTEIN 7 632 - -
Csa03g01176 634 Pfam Domain of unknown function (DUF3527) 272 620 IPR021916 -
Csa03g01176 634 PANTHER EXPRESSED PROTEIN 7 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01176 - - - csv:101209831 1264.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01176 Csa-Chr3:9149726 Csa05g00281 Csa-Chr5:1733274 8.63E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g776 Blo01g00302 . . . . Bpe14g01275 . . . . Cma06g01298 Cma14g01840 Car06g01114 Car14g01648 Sed01g3879 Cpe08g00355 Cpe03g01540 Bhi01g00682 Tan10g0638 Cmetu06g1225 . . . . . . . . . . . . Cone15ag0186 Cone7ag0346 Cone4ag0360 Lsi05g01765 . . Cme06g00456 . . Bda11g00646 Bda13g00042 Bpe05g01108 Bpe13g00539 Bma02g00754 Bma06g01615 . Cmo06g01307 Cmo14g01881 . . . . . . . . . . . . . Cla05g00415 Cam05g0452 Cec05g0459 Cco05g0461 Clacu05g0449 Cmu05g0426 Cre05g0489 . Csa03g01176 Chy06g00438 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003342 2 2 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 10 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01176 Csa_Chr03 FPKM 11.363234 10.956447 7.791338 8.480847 5.728895 5.95002 6.561545 16.742653 14.344264 14.842306