Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01187 ATGGGGTTATCCCTTCTACGAGCCATGACCTCCGCCTCCGTATCCACCTCCGCCGCTCGCCTCTCTATCCTTCCCAGACGCCTCTTCTCCTCCTCGTCTACTCTTACACATCCTACTTCGCCTTCTTCTTTCACTCTCCGCCGTCGATCTCTCCCTCTGCTTTCCCATGCCGTTCGATCTATCCCTTCCACCTCCAGGTTCGACTCGTTGCGTTGCTTTTCCTCTAGGCCTGGTAACTCCTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAATGAACGTCCTCCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTACGAGCACTGGCTCATTGTCATGGACAAACCTGGTGGTGAGGGTGCCACCAAGCAGCAGATGATTGATTGCTATATTCAGACTCTTGCTAAAATTGTTGGCAGTGAAGAGGAAGCAAAGAAGAGGATTTATAATGTTTCTTGCGAGAGGTATTTTGGATTTGGCTGTGAGTTGGATGAAGAGACCTCCAACAAGCTCGAAGGTTTGCCAGGTGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCAGAGTATAAAGACTATGGGGCTGAGTTGTTGGTGAATGGAGAGATTGTTCAAAGGTCACCGGAGAGACAGAGAAGGGTGCAGCCACAGCCTCAGAGAGCTAATGATAGACCAAAATATACAGACAGGACCCGCTATGTGCGACGCAGAGAGAATATGTCTTGA 732 49.45 MGLSLLRAMTSASVSTSAARLSILPRRLFSSSSTLTHPTSPSSFTLRRRSLPLLSHAVRSIPSTSRFDSLRCFSSRPGNSSYSPLNSNSNFNERPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKIVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELLVNGEIVQRSPERQRRVQPQPQRANDRPKYTDRTRYVRRRENMS* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9199590 9202682 + CsaV3_3G011870.1 Csa03g01187 522092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01187 243 MobiDBLite consensus disorder prediction 209 243 - -
Csa03g01187 243 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 106 189 IPR037045 -
Csa03g01187 243 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 8 242 IPR039206 GO:0016554
Csa03g01187 243 MobiDBLite consensus disorder prediction 218 243 - -
Csa03g01187 243 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 8 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01187 - - - csv:101205637 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01187 Csa-Chr3:9199590 Csa04g00829 Csa-Chr4:5813261 8.95E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01187 Csa_Chr03 FPKM 4.8056 4.842356 90.442757 94.218468 54.867252 56.999123 60.14806 0.534691 0.347194 0.0