Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01189 ATGAGAGCAAAAGACTGGATTGACGAACGAATTTTTTTGCTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTGGATGAAATGGCTCATTCATCAGATTCTTTGGCAACTCGAGACTATTCAGCGAGTGGTTTTTCATCCCGAACAGGTGGCGAGGTGGAACAAAAGGTTGATAATGGGAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGGAAGCTCGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTGTTTGAAGGAATAGATATCGCTGCTGTAATTTCCAGGATAAAAGCTTCCTTTTCAACCAGATATGAACAAAATAGGCGCCAATCACAAAGCAATGTTGTGCCTACTATGTCCATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTGCACGGTTTAGGAAGATATGTCGAGGCCGCAAAATCGTGCAAGCTAATTTTAGACACTGTTGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGACTGTAAATTGCAAGAGACACTAACGAAGGCTGTTGATTTACTTCCAGAATTGTGGAAATCTGCTGGTTCTCCACAAGAATCTATCTTGTCGTATAGGCGTGCGCTTCTCTATCAATGGAATCTAGAAATGGAAGCCAGAGCAAGAATAGAAAAAGAGTTCGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCAAATCTTCGTTCACAGATGGATAGCTCGTTCGTGCCAAGAAATAATATGGAAGAGGCCATTCTTTTGTTAATGGATCTGATGAGAAAATATACACTTGGATTGATTGTATGGGATCCATCAATAATAGAACATCTCTCCTTTGCACTTTCTGTATCAGGGGAATTTGGAGCTCTAGCTAGTGAGGTTGAACAATTGCCTCCTGGAATTATAGGAAGAAAAGAAAAGTACTGTATCCTAGCACTTTGTTACTATGGGGAAGGTAAAAGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAGTAACATAGAGAATGTGGACTGCATGTTGGAACTGTTGCTGGCTTCTAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTGGCCTACACAATGAGAGTTCTTTCACAGCTGCATGGAAAATGCATCCAATTGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAGTTAGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAATCTGAAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATTGTATATCATCTTTGTATCGAATATGCCGAACAGAGGAAGCTGGATTTTGCGCTATATTATGCAAAACAACTAGTGAAACTCGAGGCAGGCTCTAGCCTGAAATCTTATGTATTGTTGGCGAGAATCTTGTCTGCCCAAAAATGGTTTGTGGATGCGGAGACTGTTCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAGCTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAAGGCCAGTTAAAAAACGGTATAGAAACATATAGTCATCTTCTTGCTATAATTCAAGTCCAGAACAAAAGTAGTGGAAAGATGCTTCCAAAGGATGTAAGAAAATACGATAGAAGTTTAGAAGTAGATACATGGCATGACTTAGCCAATATTTACACAGGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTGTCAAAATTGCAAGCAATCGATCCGTATTCTGCTTCCAAGTGGCATTCCACAGGTTTACTCTACGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCCACTGCCCGTCTTCTCCAACAGCTAGGTGGTAGTCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGATGCCCTTCGACTAGATCGAGCAAATCCATCTGCATGGTACAGTCTTGGGATGCTATATAAAGCTGACGCTGGAGCATCGGCATTGGAGGTTGCTGAATGCTTTGAAGCTGCAACTCTACTTGAAGAGTCGGCACCAGTTGAACCTTTCAGAAGATGA 2199 41.66 MRAKDWIDERIFLLKSKFRKMINCIRSGDQLRVDEMAHSSDSLATRDYSASGFSSRTGGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASFSTRYEQNRRQSQSNVVPTMSMHAISLLLEAIFLKAKSLHGLGRYVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPQESILSYRRALLYQWNLEMEARARIEKEFAIFLLYSGCDASPPNLRSQMDSSFVPRNNMEEAILLLMDLMRKYTLGLIVWDPSIIEHLSFALSVSGEFGALASEVEQLPPGIIGRKEKYCILALCYYGEGKSLVALNLLKNFLSNIENVDCMLELLLASKLCGENLVCLDEGVAYTMRVLSQLHGKCIQLASVANCLLGVLLSAMSKLVASDSQKTLKQSEALKALQTAEQLMRQRDPFIVYHLCIEYAEQRKLDFALYYAKQLVKLEAGSSLKSYVLLARILSAQKWFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQNKSSGKMLPKDVRKYDRSLEVDTWHDLANIYTGLSQWRDAEICLSKLQAIDPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTARLLQQLGGSQSFPVVRSLLTDALRLDRANPSAWYSLGMLYKADAGASALEVAECFEAATLLEESAPVEPFRR* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9205046 9210365 - CsaV3_3G011890.1 Csa03g01189 522094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01189 732 Gene3D Tetratricopeptide repeat domain 59 568 IPR011990 GO:0005515
Csa03g01189 732 SUPERFAMILY TPR-like 156 559 IPR011990 GO:0005515
Csa03g01189 732 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
Csa03g01189 732 SUPERFAMILY TPR-like 532 701 IPR011990 GO:0005515
Csa03g01189 732 SMART tpr_5 531 564 IPR019734 GO:0005515
Csa03g01189 732 SMART tpr_5 153 186 IPR019734 GO:0005515
Csa03g01189 732 SMART tpr_5 619 652 IPR019734 GO:0005515
Csa03g01189 732 SMART tpr_5 585 618 IPR019734 GO:0005515
Csa03g01189 732 SMART tpr_5 495 528 IPR019734 GO:0005515
Csa03g01189 732 MobiDBLite consensus disorder prediction 47 68 - -
Csa03g01189 732 Pfam Tetratricopeptide repeat 626 651 IPR019734 GO:0005515
Csa03g01189 732 MobiDBLite consensus disorder prediction 47 62 - -
Csa03g01189 732 Gene3D Tetratricopeptide repeat domain 569 727 IPR011990 GO:0005515
Csa03g01189 732 PANTHER PROTEIN NPG1 13 731 IPR043376 -
Csa03g01189 732 PANTHER OS10G0471400 PROTEIN 13 731 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01189 Csa-Chr3:9205046 Csa04g02189 Csa-Chr4:22664714 0 dispersed
Csa02g01891 Csa-Chr2:17922239 Csa03g01189 Csa-Chr3:9205046 0 transposed
Csa03g01189 Csa-Chr3:9205046 Csa03g02608 Csa-Chr3:24633203 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01189 K21843 - csv:101206105 1430.23