Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01194 ATGGCTGCTCTAGCCAGCTCTCTTCTTCAGTCTTCACTCCAGATCCGTACTTCCGATTCTTCTTTTGGGTCTCTTTTTCCATCTACAATACATCGGATTGCACCCAGTTTCAACCTCAAGTGTTCCCGCCTCCACTCTCTGTTTTCCCTCGACGGCGGACCCAGAAGAATTTTATCTTTGAAATCGGTTTCAGTCAATGTTTACGCGGACCCTGCGTCGGCCTCTCCCTCTGTTGTTGACGAATACCAGGCCAAGTCTGAGCTCCTTGCATCCTTGAAGGTCAAGCTACTGACTGCGGTTTCAGGGTTAAACAGAGGTCTTGCTGCTGATGAGGATGATTTACAGAAGGCAGACGAGGCTGCCAAGGAGATTGAAGCTGTTGGGGGGCCTGTGGACCTCTCAGTTGATCTTGACAAATTGCAAGGAAGATGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTTTAGGCGGTAGTAGACCAGGACCTCCCACGGGAAGGCTACTTCCTATTACTCTTGGTCAGGTGTTTCAGCGAATCGACATCATCAGTAAAGATTTTGATAACATTGTAGAACTCGAACTAGGTGCTCCTTGGCCTCTACCTCCTGCTGAAGTCACTGCTACATTGGCTCACAAGTTTGAAATCATAGGGTCTGCTAAGATTAAAATTATTTTTGAGAAAACGACCGTGAAAACAACTGGGAACTTGTCACAGCTTCCACCATTAGAGGTACCTCGGATTCCAGATGCCTTGAGGCCTCCGTCCAACACTGGAAGTGGTGAATTTGAAGTCACTTACCTTGACAACGATATTCGAATCACCAGAGGAGATAGAGGAGAACTCAGGGTGTTTGTTATCTCATAA 870 46.78 MAALASSLLQSSLQIRTSDSSFGSLFPSTIHRIAPSFNLKCSRLHSLFSLDGGPRRILSLKSVSVNVYADPASASPSVVDEYQAKSELLASLKVKLLTAVSGLNRGLAADEDDLQKADEAAKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDIISKDFDNIVELELGAPWPLPPAEVTATLAHKFEIIGSAKIKIIFEKTTVKTTGNLSQLPPLEVPRIPDALRPPSNTGSGEFEVTYLDNDIRITRGDRGELRVFVIS* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9253257 9255819 + CsaV3_3G011940.1 Csa03g01194 522099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01194 289 PANTHER PLASTID-LIPID-ASSOCIATED PROTEIN 6, CHLOROPLASTIC 1 289 - -
Csa03g01194 289 PANTHER - 1 289 IPR039633 -
Csa03g01194 289 Pfam PAP_fibrillin 91 286 IPR006843 -
Csa03g01194 289 Coils Coil 107 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01194 - - - csv:101206582 550.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03385 Csa-Chr1:30540102 Csa03g01194 Csa-Chr3:9253257 7.58E-14 dispersed
Csa03g01194 Csa-Chr3:9253257 Csa03g02743 Csa-Chr3:26294494 2.90E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g736 . . . . . Bpe14g01266 . . . . Cma06g01312 . Car06g01126 . . Cpe08g00343 . Bhi01g00710 . . . Hepe05g1669 . . . . . . . . . . . Cone7ag0334 Cone4ag0341 Lsi05g01746 . . Cme06g00476 Blo02g00754 Blo07g00272 . Bda13g00052 . Bpe13g00548 Bma02g00765 . . Cmo06g01320 . . . . . . . . . . . . . . Cla05g00432 Cam05g0470 Cec05g0479 Cco05g0479 Clacu05g0467 Cmu05g0446 Cre05g0507 . Csa03g01194 Chy06g00458 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009193 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01194 Csa_Chr03 FPKM 2.182796 1.998327 4.985659 2.891918 3.263175 1.246475 2.277453 2.889408 2.178192 1.709965