Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01195 ATGGCCACCTCTGTAAAGGGCCTCTTAAAAGGATTAAGATACATTTCACAGATTTTCGATGAGAAAGAACCAGAAATGCAGATTGGTCTTCCTACTGACGTTAAGCATGTTGCTCATATTGGATGGGATGGTCCTTCTGGGAATCAAAACAATACACCTACTTGGATGAACGAGTTTAAATCTTCACCAAAAACTCAAACCTCAAACGATTTGGTTAGTTCTATTGGGGAACTTGATCTTACTTCTACTAATATCCCCACTCAAGAGTCTGGAGACCTAGATGTGCAAAAGGCAAGTCGAGCACCGAGGTCGAAACGCCAAACATCGTCCGAGTCTTCGTCAGGTCTAGACTCTTCATCTAATCGGCGAAACTCGGAGAAGGGATCTAGACGACAACGCTCATCGTGCCCTTCAGGTGACTCTGGTCCTCAGGAAGGTAGTTCTCGAAGTTCACGACGTCGGCGTGGTGAATCAAGCACAGAAAATCCTGTCCCAAAACACTCGCATCGGAGGAAATCTAAGGGATCGTCTGATGGTGGTGAATCAACGAGATCATCAAGATCAAGAGATAATAACTCCTTAACAGACATACCTCTCCCAGTTTTGGAAGCCGTGGATGAAGAGAAGGGATGA 633 45.18 MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPTWMNEFKSSPKTQTSNDLVSSIGELDLTSTNIPTQESGDLDVQKASRAPRSKRQTSSESSSGLDSSSNRRNSEKGSRRQRSSCPSGDSGPQEGSSRSSRRRRGESSTENPVPKHSHRRKSKGSSDGGESTRSSRSRDNNSLTDIPLPVLEAVDEEKG* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9255512 9257320 - CsaV3_3G011950.1 Csa03g01195 522100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01195 210 Pfam P21-Rho-binding domain 27 62 IPR000095 -
Csa03g01195 210 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 208 IPR044510 -
Csa03g01195 210 CDD CRIB 26 62 - -
Csa03g01195 210 MobiDBLite consensus disorder prediction 102 122 - -
Csa03g01195 210 MobiDBLite consensus disorder prediction 179 195 - -
Csa03g01195 210 MobiDBLite consensus disorder prediction 39 210 - -
Csa03g01195 210 SMART PBD_5 28 62 IPR000095 -
Csa03g01195 210 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 208 - -
Csa03g01195 210 MobiDBLite consensus disorder prediction 147 166 - -
Csa03g01195 210 Gene3D CRIB domain 24 71 IPR036936 -
Csa03g01195 210 MobiDBLite consensus disorder prediction 44 94 - -
Csa03g01195 210 MobiDBLite consensus disorder prediction 131 146 - -
Csa03g01195 210 ProSiteProfiles CRIB domain profile. 28 41 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01195 - - - csv:101211802 368.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01100 Csa-Chr1:6830012 Csa03g01195 Csa-Chr3:9255512 4.25E-25 dispersed
Csa01g03341 Csa-Chr1:29957388 Csa03g01195 Csa-Chr3:9255512 9.31E-08 dispersed
Csa03g01195 Csa-Chr3:9255512 Csa06g03533 Csa-Chr6:28779442 4.97E-14 dispersed
Csa03g01195 Csa-Chr3:9255512 Csa03g02208 Csa-Chr3:19213895 5.28E-29 wgd
Csa03g01195 Csa-Chr3:9255512 Csa06g00752 Csa-Chr6:6092341 7.78E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01195 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.396671 0.0 0.0