Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01197 ATGGGAGGGGGCAAGCAGGTCGATGTCGGTGTCGGTGTTGACGACATTAGCCTCAAGGACCTCTCGTTAAAGCTTGAGGAGTTTGCCAAGGCCAGAAATTGGGAGAAGTATCATAGTCCTAGAAACCTTCTCCTTGCCATGGTAGGAGAAGTAGGAGAGTTATCAGAAATATTCCAATGGAGAGGAGAAGTGGAGAAAGGACTGGCAGATTGGGAGGAATCAGATAAAGAGCATCTTGGTGAAGAACTTTCTGATGTGTTGCTTTATCTCATCAGATTGGCTGACATTTGTGGAATCAATTTGGCTAATGCTGCTACTAAGAAACTTGTTAAGAACTCCATCAAATACCCCACCCCCTAA 360 45.0 MGGGKQVDVGVGVDDISLKDLSLKLEEFAKARNWEKYHSPRNLLLAMVGEVGELSEIFQWRGEVEKGLADWEESDKEHLGEELSDVLLYLIRLADICGINLANAATKKLVKNSIKYPTP* 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9265117 9266412 - CsaV3_3G011970.1 Csa03g01197 522102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01197 119 PANTHER DCTP PYROPHOSPHATASE 1 12 118 - -
Csa03g01197 119 Pfam MazG-like family 50 117 IPR025984 GO:0009143|GO:0047429
Csa03g01197 119 Gene3D - 11 119 - -
Csa03g01197 119 PANTHER - 12 118 - -
Csa03g01197 119 PIRSF UCP029826_pph 10 119 IPR025984 GO:0009143|GO:0047429
Csa03g01197 119 CDD NTP-PPase_RS21-C6_like 24 112 IPR025984 GO:0009143|GO:0047429
Csa03g01197 119 SUPERFAMILY all-alpha NTP pyrophosphatases 16 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01197 K16904 DCTPP1; dCTP diphosphatase [EC:3.6.1.12] - csv:101207880 227.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00265 Csa-Chr1:1665078 Csa03g01197 Csa-Chr3:9265117 2.86E-50 dispersed
Csa03g01197 Csa-Chr3:9265117 Csa07g01588 Csa-Chr7:16382047 2.56E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g731 Blo01g00274 Blo12g00152 Bda03g01076 . Bpe04g00999 . Bma04g00990 Bma05g01219 . . . Cma14g01820 . Car14g01632 . . Cpe03g01524 Bhi01g00714 . . . Hepe05g1666 . . . . . . . . . Cone14ag0159 Cone15ag0170 . . Lsi05g01743 . . Cme06g00479 . . Bda11g00639 . Bpe05g01074 Bpe13g00550 . Bma06g01606 . . Cmo14g01860 . . . . . . . . . . . . . Cla05g00435 Cam05g0473 Cec05g0482 Cco05g0482 Clacu05g0470 Cmu05g0448 Cre05g0510 . Csa03g01197 Chy06g00461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011640 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01197 Csa_Chr03 FPKM 40.688179 40.090816 17.772408 16.289402 18.123745 19.679735 18.499252 10.907275 9.747877 11.442765