Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01209 ATGGCTACTGCATCAGTTGCTTTCAAATCTAGGGAGGATCATCGCAAACAACTAGAATTAGAGGAAGCACGCAAAGCAGGGCTTGCACCTGCTGAGGTTGATGAAGATGGGAAAGAAATCAACCCTCACATTCCTCAATATATGTCCTCTGCACCTTGGTATCTCAACGCTGAGAGACCAAGTTTAAAACATCAAAGAAAATGGAAATCGGATCCAAATTATACAAAATCCTGGTACGACAGAGGTGCAAAAATACATCAGGCTGACAAGTACAGGAAGGGTGCATGTGAAAATTGTGGAGCAATGACACATGATGCAAAGGCATGCATGGAAAGGCCCCGAAAGGTAGGAGCCAAATGGACAAACATGCACATAGCACCAGATGAAAAGATTGAGACATTTGAACTAGATTATGATGGAAAAAGGGATCATTGGAATGGTTATGATCCAGCAACCTATGCTCGTGTCATTGAGAGGTATGAGGCTAGGGATGAAGCAAGGAGAAAGTTTTTGAAAGAACAACAACTTAAAAAATTGGAAGAGAAAAATAATAAGCAGACTGAGGATGATGAAGTTAGTGATGAGGATGAGGATGAAGATGAGGATGAAGATGATTTGAAGGTTGATGAGGCAAAGGTTGATGAGAGCAAGCAAATGGATTTTGCAAAAGTTGAAAAGCGTGTTCGCACGACTGGTGGTGGAAGCACGGGAACTGTTAGGAACTTGCGAATTCGGGAAGATACAGCCAAATATCTTTTAAATCTTGATGTTAACTCGGCTTATTACGATCCCAAAACTCGGTCTATGCGTGAAGATCCTCTTCCTGATGCTGATCCAAATGAGAAGTTTTATGGAGGTGATAACCAAAATAGAATCAGTGGGCAAGCTTTGGATTTCAAGCAACTCAATGTACATGCTTGGGAAGCATTTGACAAGGGTCAAGATATTCATCTGCAAGCTGCTCCATCACAAGCTGAACTTCTGTATAAGAACTATACGGTTATTAAAGAAAAATTGAAGTCACATACAAAGGATGCCATCATGGAGAAGTATGGGAATGCTGCTGCAGAGGAAAAGCTGCCTCGAGAACTTTTATTGGGACAGAGCGAGAGGCAAGTTGAATATGACCGTGCTGGCAGAATCGTTAAAGGCCTGGAGTTGGCTCTTCCTAAAAGTAAATATGAGGAAGATGTTTTCATTAACAACCACACGAGTGTTTGGGGTTCATGGTGGAAGGATCATCAGTGGGGCTATAAATGCTGTAAGCAAACCATTCGGAACAGTTATTGCACTGGGGCTGCTGGAATTGAGGCGGCTGAGGCAGCAGCAGACTTAATGAAGTCTAACATTGCTCGTAAAGCAACTTCTGAAGATACACCAGCCTCAACAGAAGAGAAAAAACTAGCTACTTGGGGAAGTGAAGTACCTGATGATATTGTCCTCGATCAGAAGAAGCTTACTGAAGCTCTCAAGAAGGAGGATGAAAGAAGGAAGGAGGAGAAGGATGAAAGAAAACGTAAATATAATGTGAGGTGGAATGATGAGGTTACTGCTGAGGACATGGAGGCGTATAGGATGAAAAGGGTACATCATGATGATCCTATGAAGGATTTTCTCAACTAA 1623 42.14 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIHQADKYRKGACENCGAMTHDAKACMERPRKVGAKWTNMHIAPDEKIETFELDYDGKRDHWNGYDPATYARVIERYEARDEARRKFLKEQQLKKLEEKNNKQTEDDEVSDEDEDEDEDEDDLKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRISGQALDFKQLNVHAWEAFDKGQDIHLQAAPSQAELLYKNYTVIKEKLKSHTKDAIMEKYGNAAAEEKLPRELLLGQSERQVEYDRAGRIVKGLELALPKSKYEEDVFINNHTSVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEAAADLMKSNIARKATSEDTPASTEEKKLATWGSEVPDDIVLDQKKLTEALKKEDERRKEEKDERKRKYNVRWNDEVTAEDMEAYRMKRVHHDDPMKDFLN* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9333260 9338381 - CsaV3_3G012090.1 Csa03g01209 522114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01209 540 MobiDBLite consensus disorder prediction 490 512 - -
Csa03g01209 540 MobiDBLite consensus disorder prediction 180 213 - -
Csa03g01209 540 MobiDBLite consensus disorder prediction 190 209 - -
Csa03g01209 540 Coils Coil 483 511 - -
Csa03g01209 540 Pfam Pre-mRNA splicing Prp18-interacting factor 136 409 IPR021715 -
Csa03g01209 540 Coils Coil 162 189 - -
Csa03g01209 540 PANTHER STEP II SPLICING FACTOR SLU7 1 539 IPR039974 GO:0000398|GO:0030628
Csa03g01209 540 MobiDBLite consensus disorder prediction 22 41 - -
Csa03g01209 540 MobiDBLite consensus disorder prediction 22 42 - -
Csa03g01209 540 PANTHER BNAC05G02170D PROTEIN 1 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01209 K12819 SLU7; pre-mRNA-processing factor SLU7 - csv:101212528 1013.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00385 Csa-Chr2:2667804 Csa03g01209 Csa-Chr3:9333260 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g710 . . . . . . . . . . Cma06g01320 Cma14g01814 Car06g01138 Car14g01627 . Cpe08g00335 Cpe03g01518 . . . . . . . . . . . . . . . . . . Lsi05g01733 . . Cme06g00493 . . . . . . . . . Cmo06g01329 Cmo14g01853 . . . . . . . . . . . . . Cla05g00444 Cam05g0484 Cec05g0493 Cco05g0492 Clacu05g0479 . Cre05g0520 . Csa03g01209 Chy06g00472 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002897 2 1 1 2 2 2 1 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01209 Csa_Chr03 FPKM 2.30762 3.049034 3.398834 2.923723 13.384085 12.994293 12.566857 3.063137 3.293276 3.06974