Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01213 ATGGCAAGAGAGCAACTACAAGTATTGAATGCACTTGATGTAGCCAAAACACAATGGTATCACTTCACAGCCATTGTAATAGCCGGAATGGGGTTTTTCACCGATGCCTATGATCTCTTTTGCGTATCTCTCGTTACTAAACTTTTGGGTCGAATTTACTTTCACAAAGAAGGCTCAGACAAGCCCGGTGAATTGCCTTCAAACATAGCCGCTGCTATAAACGGCGTCGCTTTCTGCGGAACCCTCTCTGGCCAACTCTTCTTCGGATGGCTCGGTGACAAAATGGGCCGCAAACGAGTCTACGGAATGACGCTTATGCTTATGGTCATTTGCTCTGTAGCTTCAGGCTTGTCTTTCAGCAGCACCCCAACGTCTGTGGTGGCCACTCTCTGTTTTTTCCGATTCTGGCTTGGGTTTGGCATCGGTGGCGATTACCCACTTTCCGCCACCATCATGTCCGAATATGCCAATAAAAGAACGCGAGGGGCTTTCATTGCTGCTGTGTTTGCAATGCAGGGGTTTGGGATTTTGGCTGGTGGGGTGGTTGCAATTATTGTCTCCTCTGCGTTTGATGCTAAATACCCAGCTCCCTCGTATCAGGAAAATCCCACCGCCTCTACTGTCCCACAGGCGGATTATGTGTGGCGAATTATTGTGATTTTTGGTGCTTTTCCGGCTCTTCTTACTTATTATTGGCGAATGAAAATGCCGGAAACTGCTCGTTATACCGCCTTGGTTGCTAAAAATGCAAAACAAGCAGCAGCCGACATGTCTAAAGTTTTGCAGGTGGAATTGGAATCGGAGCAGGAAAAGATTGACGAGGGAAAATCGAAGAACGATTTTGGGTTGTTCACAATGAGTTTTCTCCGTCGACATGGGTTACATTTGTTGGGGACTACCTCTACTTGGTTTTTGTTGGACATAGCATTTTACAGTCAAAATCTCTTTCAGAAAGACATTTTCACTGCCATCGGTTGGCTTCCTCCGGCAAAGACAATGAACGCCATTGAAGAAGTTTTCAGAATAGCTAGAGCGCAAACTCTCATCGCATTATGTAGTACAGTTCCAGGGTATTGGTTCACCGTAGCGCTAATCGACAGAATGGGACGATTTGCAATTCAATTGATGGGATTTTTCTTCATGACGGTGTTCATGTTCGCATTGGCCATTCCTTACCATCATTGGACATTGGAAGCCAACAGAATCGGTTTTGTTGTAATGTATTCACTAACGTTCTTCTTCGCGAATTTCGGGCCAAATGCGACGACTTTCGTGGTTCCGGCAGAGATATTTCCAGCAAGACTCCGGTCGACGTGCCACGGAATATCAGCTGCATCGGGAAAAGCAGGGGCAATCGTTGGGGCATTCGGATTTCAGTATGCGGAGAAAGGGTTTGGAGTGAAGAAGACATTGATAATTCTAGGGGTTGTGAATGCTCTTGGGATGTTCTTCACTTTGTTAGTTCCTGAATCCAAGGGGAAGTCTTTGGAAGAAATGTCCGGTGAAGGTAGAGATGATGAGGCTCAGAGCACAATAGAGTCAAGAACTGTGCCTGTTTGA 1560 46.09 MAREQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYFHKEGSDKPGELPSNIAAAINGVAFCGTLSGQLFFGWLGDKMGRKRVYGMTLMLMVICSVASGLSFSSTPTSVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGGVVAIIVSSAFDAKYPAPSYQENPTASTVPQADYVWRIIVIFGAFPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELESEQEKIDEGKSKNDFGLFTMSFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMNAIEEVFRIARAQTLIALCSTVPGYWFTVALIDRMGRFAIQLMGFFFMTVFMFALAIPYHHWTLEANRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFQYAEKGFGVKKTLIILGVVNALGMFFTLLVPESKGKSLEEMSGEGRDDEAQSTIESRTVPV* 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9360966 9365368 - CsaV3_3G012130.1 Csa03g01213 522118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01213 519 MobiDBLite consensus disorder prediction 497 511 - -
Csa03g01213 519 TIGRFAM 2A0109: phosphate:H+ symporter 11 502 IPR004738 GO:0005315|GO:0006817|GO:0016021
Csa03g01213 519 Gene3D MFS general substrate transporter like domains 20 517 IPR036259 -
Csa03g01213 519 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 493 IPR020846 GO:0022857
Csa03g01213 519 SUPERFAMILY MFS general substrate transporter 12 500 IPR036259 -
Csa03g01213 519 MobiDBLite consensus disorder prediction 497 519 - -
Csa03g01213 519 CDD MFS_PhT 25 492 - -
Csa03g01213 519 Pfam Sugar (and other) transporter 25 500 IPR005828 GO:0016021|GO:0022857|GO:0055085
Csa03g01213 519 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 4 512 - -
Csa03g01213 519 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 4 512 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01063 Csa03g01213 CCT
Csa02g01063 Csa03g01213 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01213 Csa-Chr3:9360966 Csa06g00361 Csa-Chr6:2938148 0 dispersed
Csa03g01213 Csa-Chr3:9360966 Csa03g01215 Csa-Chr3:9373442 0 proximal
Csa03g02186 Csa-Chr3:19003078 Csa03g01213 Csa-Chr3:9360966 2.73E-132 transposed
Csa04g02735 Csa-Chr4:26288388 Csa03g01213 Csa-Chr3:9360966 0 transposed
Csa02g01063 Csa-Chr2:10325177 Csa03g01213 Csa-Chr3:9360966 0 wgd
Csa03g01213 Csa-Chr3:9360966 Csa03g02234 Csa-Chr3:19644068 4.87E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01213 K08176 - csv:101209582 1019.61