Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01215 ATGACACAAGAGTTGGGAGTTCTAAATGCACTTGATGTTGCAAAGACTCAATGGTACCATTTCACAGCCATCATCATAGCCGGAATGGGGTTCTTCACGGACGCCTATGATCTTTTCTGCATCGCGGTGGTGTCGAAGTTGATAGGTCGAATATACTACTACACGCCGGGGTCCTCTCGGCCAGGGTCACTTCCTCCAAACGTCTCGGCAGCAGTGAGTGGGGTGGCTCTATGTGGAACACTGGCGGGGCAGCTGTTCTTCGGGTGGCTAGGCGACAAGATGGGGAGGAAGAAAGTGTATGGGATAACGTTGATACTGATGGTGGTATGTTCATTTGGGTCGGGGCTAAGTTTTGGGCATTCGGCAAAAGCAACAATGACCACTTTATGTTTGTTTCGGTTCTGGCTTGGGTTTGGGATTGGGGGCGATTACCCACTTTCGGCGACAATCATGTCTGAATATGCTAATAAGAAAACACGAGGGGCTTTTATAGCTGCTGTTTTCGCCATGCAAGGTTTTGGAATTTTGGCCGGTGGAATCGTAGCGTTGATTGTTTCAGCTGCATTCAACAACAGATTCTCAGCACCTTCATACGAGATTGACCCAGTGGGATCAACTGTACCGGAGTCAGACTACGTATGGCGCGTTGTTCTAATGTTTGGCGCCATCCCAGCAGGAATGACATACTATTGGCGTATGAAGATGCCCGAAACTGCCCGTTACACCGCTCTAGTAGCAAAGAACGCCAAACAAGCTGCAGCGGACATGTCGAAAGTGTTACAAGTAGTGGTTGAGGCAGAAGAAGAGAAGTTAGAAAAAATATTAAACACAAACAAAAACAACTTCGGCTTGTTTTCAAGGCAATTCCTCAAGCGCCATGGCCTTCACTTGGTTGGAACCACAACCACTTGGTTCTTACTAGACATTGCATTTTATAGCCAAAACCTTTTCCAGAAAGACATATTCACTGCAATAGGTTGGCTCCCTCCCGCTAAAACCATGAGCGCTCTTGAAGAGTGCTTTCGTATCGCTAGGGCGCAAACGCTCATTGCGCTTTGTGGGACCGTGCCAGGCTATTGGTTCACTGTGGCTTTGATTGATATCATCGGTAGATTCACCATCCAATTAATTGGGTTCATTATGATGACGATTTTCATGTTCGCTATTGCCTTCCCTTACAACCATTGGATTTTAAAAGAGAATCGAATTGGGTTTTTGGTCATGTATTCCTTAACATTTTTCTTTGCAAATTTTGGGCCTAACTCCACTACTTTCATCGTTCCGGCTGAAATCTTTCCGGCTAGGCTAAGATCCACATGTCACGGGATCTCCGCTGCCGCCGGTAAAGCTGGAGCAATTATCGGTGCTTTCGGGTTCTTGTATGCAGCACAAAATCCTGACAGAACAAAAACGGACCTAGGGTATCCACCCGGTATTGGTGTTAAGAACTCTCTCATTGCACTTGGTTGCATCAATTTCATCGGTAGTGTGCTCACCTTGTTGGTGCCGGAACCTAAAGGAAAATCGCTTGAGGAGTTGACCGGAGAAAATGAGGAGCCGGAGGTAGAAGCCGTTGGCCAACAACAAGTATGA 1593 46.89 MTQELGVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCIAVVSKLIGRIYYYTPGSSRPGSLPPNVSAAVSGVALCGTLAGQLFFGWLGDKMGRKKVYGITLILMVVCSFGSGLSFGHSAKATMTTLCLFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAAFNNRFSAPSYEIDPVGSTVPESDYVWRVVLMFGAIPAGMTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVVVEAEEEKLEKILNTNKNNFGLFSRQFLKRHGLHLVGTTTTWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMSALEECFRIARAQTLIALCGTVPGYWFTVALIDIIGRFTIQLIGFIMMTIFMFAIAFPYNHWILKENRIGFLVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQNPDRTKTDLGYPPGIGVKNSLIALGCINFIGSVLTLLVPEPKGKSLEELTGENEEPEVEAVGQQQV* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9373442 9376131 - CsaV3_3G012150.1 Csa03g01215 522120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01215 530 CDD MFS_PhT 24 506 - -
Csa03g01215 530 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Csa03g01215 530 Gene3D MFS general substrate transporter like domains 270 529 IPR036259 -
Csa03g01215 530 SUPERFAMILY MFS general substrate transporter 11 513 IPR036259 -
Csa03g01215 530 Coils Coil 249 269 - -
Csa03g01215 530 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 1 523 - -
Csa03g01215 530 MobiDBLite consensus disorder prediction 510 530 - -
Csa03g01215 530 TIGRFAM 2A0109: phosphate:H+ symporter 10 516 IPR004738 GO:0005315|GO:0006817|GO:0016021
Csa03g01215 530 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 523 - -
Csa03g01215 530 Pfam Sugar (and other) transporter 25 513 IPR005828 GO:0016021|GO:0022857|GO:0055085
Csa03g01215 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 507 IPR020846 GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01063 Csa-Chr2:10325177 Csa03g01215 Csa-Chr3:9373442 0 dispersed
Csa03g01215 Csa-Chr3:9373442 Csa06g00361 Csa-Chr6:2938148 0 dispersed
Csa03g01213 Csa-Chr3:9360966 Csa03g01215 Csa-Chr3:9373442 0 proximal
Csa03g01215 Csa-Chr3:9373442 Csa03g02235 Csa-Chr3:19645056 6.26E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01215 K08176 - csv:101213007 1026.16