Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01217 ATGGATTATTCTGCATTCATCTCCCCGCTTTCTGATTTCTCATCCGAATCATCTTTCGGTTCACCCGAATCCTCCTTCACCAATTTGGACCATAATTTTCTCCCTTTCAATGAAAATGACTCAGAGGAAATGCTTCTTTACGGCCTAATCTCCGAGGGCACATACGAATCATTCGATACAAGTATCGGAACCGTGCAAGTGAAGGAAGAGGAAGTCGATTCCATCGGAGAAGAAAGCCCGAAGAAAGAGAGGGCTTATAGAGGAGTTCGCCGCCGTCCATGGGGGAAATTTGCGGCGGAAATTAGAGATTCCACTAGACATGGTACAAGGGTATGGTTGGGAACTTTCGATAGTGCTGAAGCCGCCGCTTTGGCTTACGATCAAGCTGCCTTTTCGATGAGGGGCGCTGCCGCAATTCTCAATTTTCCTGTCGACAGAGTTAGAGAGTCTCTCAAAGAGATGAACGCCGGCAGTGGGGGCAGCGGTGATAGTTTAGCCGAAGACGGCGGCTCTCCGGTAGTGGCGTTAAAAAGAAAACACTCGATTAGAAGGAAAGCCATAGGTAAAAAGAGCAAAGAGAGAGATGTGAGGATTCAAACTGTGGTGGTTTTGGAAGATTTAGGGACAGAGTATTTGGAAGAACTTTTGGGGTCTTCTCAAAGTGATAGCCCTTCTTGTTCTTTCTAA 687 46.72 MDYSAFISPLSDFSSESSFGSPESSFTNLDHNFLPFNENDSEEMLLYGLISEGTYESFDTSIGTVQVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGTRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNAGSGGSGDSLAEDGGSPVVALKRKHSIRRKAIGKKSKERDVRIQTVVVLEDLGTEYLEELLGSSQSDSPSCSF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9386136 9387398 - CsaV3_3G012170.1 Csa03g01217 522122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01217 228 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Csa03g01217 228 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Csa03g01217 228 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Csa03g01217 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 218 - -
Csa03g01217 228 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Csa03g01217 228 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Csa03g01217 228 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Csa03g01217 228 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Csa03g01217 228 PANTHER DNA-BINDING DOMAIN 27 218 IPR044808 GO:0003700|GO:0009873
Csa03g01217 228 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01217 Csa-Chr3:9386136 Csa06g03670 Csa-Chr6:29493518 5.79E-36 dispersed
Csa07g01649 Csa-Chr7:16919258 Csa03g01217 Csa-Chr3:9386136 4.46E-51 transposed
Csa02g01071 Csa-Chr2:10411032 Csa03g01217 Csa-Chr3:9386136 3.56E-79 wgd
Csa03g01217 Csa-Chr3:9386136 Csa03g02237 Csa-Chr3:19674392 2.46E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31169 PF00847 AP2 3.80E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01217 K14516 - csv:101210326 401.749