Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01218 ATGGAGGATCATCGTAAGGGTAAAGAACAACAAAAGCATGGTGACGATGGGATCAAGTACCGGGGTGTGCGACGTCGCCCATGGGGGAAATATGCAGCGGAGATACGTGATCCGTCGAAGAATGGGGCTAGACAATGGCTTGGGACCTACGAAACGGCGGAGGATGCAGCTAGGGCTTACGATCAGAGGGCATTTCAGTTGAAAGGTCATCTTGCTAGTTTGAATTTTCCTAGTGAATATTATGCTCGTGTCATGGGTTCACCTCCTCATCCTCCTAACTTGTTTTCTTCGACTTCGATCAATTCGGGTTTTGACAGCGGTGGTGTTGGTGGTGGATCGTCGACTTCTAACATCGATCCTCACAAAGTTATTGTGTTTGAGTATGTGGATGGTAGGGTTTTGGAAGACCTTCTGGCTCAAGAGGATAAAAAGAAGAAGAAGAATACCTAG 450 47.11 MEDHRKGKEQQKHGDDGIKYRGVRRRPWGKYAAEIRDPSKNGARQWLGTYETAEDAARAYDQRAFQLKGHLASLNFPSEYYARVMGSPPHPPNLFSSTSINSGFDSGGVGGGSSTSNIDPHKVIVFEYVDGRVLEDLLAQEDKKKKKNT* 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9398556 9399162 + CsaV3_3G012180.1 Csa03g01218 522123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01218 149 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Csa03g01218 149 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Csa03g01218 149 PANTHER DNA-BINDING DOMAIN 1 142 IPR044808 GO:0003700|GO:0009873
Csa03g01218 149 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Csa03g01218 149 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Csa03g01218 149 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g01218 149 Pfam AP2 domain 19 70 IPR001471 GO:0003700|GO:0006355
Csa03g01218 149 PANTHER ETHYLENE RESPONSE FACTOR 1 142 - -
Csa03g01218 149 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Csa03g01218 149 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Csa03g01218 149 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01218 - - - csv:101213248 296.204
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01072 Csa03g01218 CCT
Csa02g01072 Csa03g01218 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01218 Csa-Chr3:9398556 Csa05g00460 Csa-Chr5:3003933 3.82E-27 dispersed
Csa03g01218 Csa-Chr3:9398556 Csa03g01219 Csa-Chr3:9407234 7.99E-25 tandem
Csa02g01072 Csa-Chr2:10447374 Csa03g01218 Csa-Chr3:9398556 7.55E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g675 . Blo12g00365 Bda03g00843 Bda08g00272 Bpe04g00797 Bpe14g01246 . Bma05g01069 Cmo08g01063 . Cma06g01331 Cma14g01808 Car06g01142 Car14g01624 . Cpe08g00329 Cpe03g01512 Bhi01g00724 . . . . . . Cla06g00656 Cam06g0701 Cec06g0706 Cco06g0714 Clacu06g0689 Cmu06g0680 Cre06g1449 . . Cone7ag0317 Cone4ag0322 Lsi05g01724 Csa02g01072 Chy05g00332 Cme06g00502 . Blo07g00256 Bda11g00626 Bda13g00070 Bpe05g00860 Bpe13g00562 Bma02g00791 . Sed02g1402 Cmo06g01335 Cmo14g01844 Cma08g01087 Cma17g00168 Car08g00962 Car17g00147 . Cpe17g00191 Bhi12g01631 Tan06g2419 Cmetu06g0922 Lac12g2186 Hepe03g0273 . Lcy13g0366 Cla05g00453 Cam05g0494 Cec05g0503 Cco05g0502 Clacu05g0489 Cmu05g0466 Cre05g0529 Lsi09g01241 Csa03g01218 Chy06g00481 Cme05g00555
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012237 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31170 PF00847 AP2 3.70E-13 CL0081 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01218 Csa_Chr03 FPKM 2.861957 2.200644 23.691496 25.632174 53.974281 54.474087 57.415867 19.059206 15.873147 16.425531