Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01220 ATGCCCAACCACAAAACCTCATCTGAATGCGCTGTTTGTTTGAGTGAATTTCAAGAACATGAGACTGTTCGAATTATTCCCATCTGTTCACATCTATTCCACATCGATTGTATCGACATTTGGCTGCAAAATAATCCCAATTGCCCACTTTGTCGCACCACCATTTCTAGCTCTCTTCTGTTTCATCCATTTCCTCTTCCGAGCTCCTCGCCCGAGGATCCAATCGCCGCCGCAACTGAAAGGGACTTCTTAGTGATTGAATTGGGTGGAATTAGAAACCACCCATCTGGCCAATTTTCACAAGAGCGGGCGAATTCAAGGGAATTGCCGGCGGTGAAATTGGAGCAGGGGAAAAAATGGCAGAAGCTTCAGAAGGTGACGAGTTTAGGGGATGAGTGGATTGACACTAGAGAGAAAGATGAGCAATTTTGTATTCAACCCATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGGCAGATGTATGTAGCGGTGCAGGCGGCGCTGCAGCAGAGCCGCCATGGGAATGAGGTTAGTCCGGGTGGCGATGGGTGTAATGGGAGAGGGAGAAGGTCTCTGTTTTCTTTTGGAAATGGGAGAAGTTGTAGAAATGCTGTTCAAGTTCAACCTGTTCAAACAAAAGGAATAGAGAAAGGTTGCTTCCGCAAATTAAAGACTAAAGCCGTTTTGTTTGCTTTACTCTACAAAGAGAGACTTGAGCAGCTTCTCTTCTTCTACAATAACCTGCGTGCCAATCTCGAACTACCCACCAGAAGCCAACAACCATTCTTAGCAATACACAATACAACGATCGAGATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGGGTTGAGACCCAGAACGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCTCTGCGTATCAAGGAGGCTGGCTTGGCCTCTGAGGTTGTGGCGGTCAGCATGGGCCCGGTTCAGTGCGTCGACACTCTCAGGACGGGCCTTGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTATCTGTTGCGAAGATTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGGAAACAGGCTATTGATGATGATTGTAATCAAACGGGGCAGATGGTTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGAAGTGACAGTAGACAGAGAAGTGGATGATGGTCTCGAGACTCTTTGTTTGAACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAGTCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCTGATCTAGAGGTCGTCGAAGTAACGGAACCTCCAAAAAGAAAAGCGGGTATCATACTGTCATCTGTTGATGAACTGATTGACAAACTAAAAAATGAAGCCCATGTCATTTGA 1575 47.24 MPNHKTSSECAVCLSEFQEHETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSLLFHPFPLPSSSPEDPIAAATERDFLVIELGGIRNHPSGQFSQERANSRELPAVKLEQGKKWQKLQKVTSLGDEWIDTREKDEQFCIQPIRRSVSMDSSAERQMYVAVQAALQQSRHGNEVSPGGDGCNGRGRRSLFSFGNGRSCRNAVQVQPVQTKGIEKGCFRKLKTKAVLFALLYKERLEQLLFFYNNLRANLELPTRSQQPFLAIHNTTIEMKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGLASEVVAVSMGPVQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKILKALVEVEKPGLLLLGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVVIDKEKQEVTVDREVDDGLETLCLNLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHVI* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9415220 9420498 + CsaV3_3G012200.1 Csa03g01220 522125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01220 524 Gene3D HUPs 274 522 IPR014729 -
Csa03g01220 524 SMART ring_2 10 51 IPR001841 -
Csa03g01220 524 Pfam Electron transfer flavoprotein domain 299 481 IPR014730 -
Csa03g01220 524 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 274 523 IPR012255 GO:0009055
Csa03g01220 524 SMART ETF_2 296 486 IPR014730 -
Csa03g01220 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 58 IPR013083 -
Csa03g01220 524 ProSiteProfiles Zinc finger RING-type profile. 10 52 IPR001841 -
Csa03g01220 524 CDD RING-H2_PA-TM-RING 9 52 - -
Csa03g01220 524 Pfam Ring finger domain 9 52 IPR001841 -
Csa03g01220 524 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 274 517 - -
Csa03g01220 524 SUPERFAMILY RING/U-box 8 59 - -
Csa03g01220 524 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA 274 523 - -
Csa03g01220 524 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 430 450 IPR000049 GO:0009055
Csa03g01220 524 CDD ETF_beta 275 478 IPR033948 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01220 K03521 fixA, etfB; electron transfer flavoprotein beta subunit - csv:101210570 489.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01220 Csa-Chr3:9415220 Csa03g04600 Csa-Chr3:40005483 1.23E-20 dispersed
Csa07g00239 Csa-Chr7:1876800 Csa03g01220 Csa-Chr3:9415220 1.87E-09 dispersed
Csa02g01073 Csa-Chr2:10465735 Csa03g01220 Csa-Chr3:9415220 4.38E-46 wgd
Csa03g01220 Csa-Chr3:9415220 Csa03g02251 Csa-Chr3:19876266 2.78E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g673 . . . . . Bpe14g01245 . . . . . Cma14g01807 . Car14g01623 . . . . . . . . . . . . . . . . . . . Cone7ag0315 Cone4ag0320 Lsi05g01720 . . Cme06g00504 Blo02g00735 . . Bda13g00071 . . Bma02g00792 . . . Cmo14g01843 . . . . . . . . . . . . . . . . . . . . . Csa03g01220 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002713 3 0 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 4 2 1 2 2 2 2 2 2 1 2 2 3 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01220 Csa_Chr03 FPKM 0.0 6.800438 8.560722 13.281957 2.679146 0.0 3.720294 68.481712 59.391968 73.226135