Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01221 | ATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTCGATTGCTCCTTCTTCCCCGACGCCGACAATCTTATTAACCCTTCACTCCATCCTTTCTGGCCTCCTAATCATTCCAGGAGGGATTCTTTAGCGGATACTGATGTTTCAGCCGGTCATCTCGAATCTGAAGAAAATGATTGTTCCAGGAAGAGGGCGCGAGATGGGTCGTGCGCTGGAGCATCTTCAAAAGCTTGTCGTGAGAGGTTACGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTAAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCTATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGAACTCAAACAAACAAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATAATTCTAAAAGAAGACAAGGAAAAAATGGAACAACAGTTGAAATCTATAGCCATTCCATCTCCAGGGCTTATACCTGGTCATCCAGCTGCATATCATGCTGCTTCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCTTAG | 681 | 42.58 | MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLKAEKNDLRKEKIILKEDKEKMEQQLKSIAIPSPGLIPGHPAAYHAASGKMAVFPGYGLIPMWQYLPPSIRDTSQDHELRPPAA* | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9421374 | 9425037 | + | CsaV3_3G012210.1 | Csa03g01221 | 522126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01221 | 226 | Gene3D | - | 74 | 155 | IPR036638 | GO:0046983 | |
Csa03g01221 | 226 | PANTHER | TRANSCRIPTION FACTOR BHLH104 | 1 | 226 | - | - | |
Csa03g01221 | 226 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 226 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Csa03g01221 | 226 | CDD | bHLH_AtILR3_like | 76 | 151 | - | - | |
Csa03g01221 | 226 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 71 | 122 | IPR011598 | GO:0046983 | |
Csa03g01221 | 226 | Pfam | Helix-loop-helix DNA-binding domain | 75 | 122 | IPR011598 | GO:0046983 | |
Csa03g01221 | 226 | SMART | finulus | 77 | 128 | IPR011598 | GO:0046983 | |
Csa03g01221 | 226 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 74 | 142 | IPR036638 | GO:0046983 | |
Csa03g01221 | 226 | Coils | Coil | 112 | 167 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01221 | Csa-Chr3:9421374 | Csa03g02287 | Csa-Chr3:20405212 | 1.90E-51 | dispersed | |
Csa03g02293 | Csa-Chr3:20456474 | Csa03g01221 | Csa-Chr3:9421374 | 3.67E-06 | dispersed | |
Csa03g01221 | Csa-Chr3:9421374 | Csa02g01354 | Csa-Chr2:13017831 | 1.14E-14 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31172 | PF00010 | HLH | 2.10E-07 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01221 | - | - | csv:101210812 | 457.988 |