Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01221 ATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTCGATTGCTCCTTCTTCCCCGACGCCGACAATCTTATTAACCCTTCACTCCATCCTTTCTGGCCTCCTAATCATTCCAGGAGGGATTCTTTAGCGGATACTGATGTTTCAGCCGGTCATCTCGAATCTGAAGAAAATGATTGTTCCAGGAAGAGGGCGCGAGATGGGTCGTGCGCTGGAGCATCTTCAAAAGCTTGTCGTGAGAGGTTACGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTAAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCTATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGAACTCAAACAAACAAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATAATTCTAAAAGAAGACAAGGAAAAAATGGAACAACAGTTGAAATCTATAGCCATTCCATCTCCAGGGCTTATACCTGGTCATCCAGCTGCATATCATGCTGCTTCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCTTAG 681 42.58 MDPLEDSSCWDFLDCSFFPDADNLINPSLHPFWPPNHSRRDSLADTDVSAGHLESEENDCSRKRARDGSCAGASSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEELKQTNEKLREEVESLKAEKNDLRKEKIILKEDKEKMEQQLKSIAIPSPGLIPGHPAAYHAASGKMAVFPGYGLIPMWQYLPPSIRDTSQDHELRPPAA* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9421374 9425037 + CsaV3_3G012210.1 Csa03g01221 522126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01221 226 Gene3D - 74 155 IPR036638 GO:0046983
Csa03g01221 226 PANTHER TRANSCRIPTION FACTOR BHLH104 1 226 - -
Csa03g01221 226 PANTHER BHLH TRANSCRIPTION FACTOR 1 226 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Csa03g01221 226 CDD bHLH_AtILR3_like 76 151 - -
Csa03g01221 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983
Csa03g01221 226 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983
Csa03g01221 226 SMART finulus 77 128 IPR011598 GO:0046983
Csa03g01221 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 142 IPR036638 GO:0046983
Csa03g01221 226 Coils Coil 112 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01221 Csa-Chr3:9421374 Csa03g02287 Csa-Chr3:20405212 1.90E-51 dispersed
Csa03g02293 Csa-Chr3:20456474 Csa03g01221 Csa-Chr3:9421374 3.67E-06 dispersed
Csa03g01221 Csa-Chr3:9421374 Csa02g01354 Csa-Chr2:13017831 1.14E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31172 PF00010 HLH 2.10E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01221 - - csv:101210812 457.988