Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01232 ATGGATTACCTGAAATCAGTTGTCCCTTCACAACTTATTGCCGAACGAGGTTCAAATTTAGTAGTCATAAACCCTGGATCTGCAAATATTAGGATTGGCCTTGCATCACAGGATGCTCCTTTTAATGTTCCTCATTGCATTGCTCGTTATACCAACCAAGTCCCCAAGAGAAATGTTCAAGATCAGATGCTTAATTCACAAGTTACAACTGCACAGCACATGGAGCGGGAGAGGGCATATGATGTTATTGCCTCGTTGCTAAAAATACCGTTTCTGGATGAAGAGGTTGCTAACAGTTCTTTCCCTCGTAAGATGGGGCGAGTTGATGGACATGGTATGCATAATGGCAAAAAGGATACTGTCTTTAGTTGGACTGACGTACATGAGAGGGACCCTACTTCACCAGTGGCAGTGGAAAGTTCAAGCTCCAAGGATGTGAACCATGAGCCTTTGGACCAGCGCGTAGATACTGATTCCAAGGAGCTTACTTCCAGTATAATCAAATATAGACAATTTATTTGTGGTGAAGATGCTCTTAAAATATCTCCCAGTGAGCCATATTGCCTGCACCGCCCTATTCGCAGAGGTCACTTGAATATCTCACAGCATTACCCTACTCAACAGGTACTTGAGGACTTGCATGCTATTTGGGACTGGATTTTGATAGAAAAATTGCATATTCCTCATAGTGAAAGAAACTTTTATTCTGCTATTCTGGTGGTCCCAGAAACATTTGACAACCGCGAAATAAAGGAAATGTTGACAATAGTATTGCGAGATTTGCGGTTTGGTTCAGCAGTGGTTCATCAGGAAGGGCTTGCTGCAGTTTTTGGGAACGGACTATCATCAGCATGTGTTGTTAACGTGGGATCACAGGTGACAACAGTTATTTGCATTGAGGATGGAGTTGCCCTGCCTGCCACAGCAAAGACTTTGCCTTTTGGTGGAGAGGACTTATCTAGATGCCTCCTGTGGACTCAAAGGCATCACCAAACTTGGCCACCAATTTGTACAGACATCTTGTCGAAGCCTGTAGATCTTCTGATGCTTAATAGATTGAAAGAGTCATACTGTGAGATTAGGGAAGGAGAGGTCGATGCTGTTGCTGTAGTTCATTCATATGAAGAAGGCACCCCTCCTAGTTCTCATAAAACAAGACTAACTGCGCTTAATGTACCACCCATGGGTTTATTCTTCCCAATGCTTTTGGTTCCAGATGTGTATCCACCACCACCCCGTGCATGGTTTCATGACTATGAAGATATGCTGGAAGAGACATGGCAGACAGAGTACTCCAAAAGACCTGATGTACCAGATAATGTATATCCTGGGGTTAACGTTAATTACCCAATGTGGGATAGCTACCCAGTTTATGCAACTAAACCTAAGAAAGAAGAGAAAGTTGGCCTTGCTGAAGCTATCACAAGCAGTATCCTCTTAACAGGGCGGATTGACCTCCAGAGGAAACTGTTCTTAAGCATACAGTTAGTAGGTGGAGTGGCTTTAACAAGGGGTCTTATTCCTGCAATGGAGGAAAGAGTTTTGCATGCAATTCCTTCAAATGAAGCAATTGACACTGTTGAGGTGTTGCAATCAAGAATAAACCCTTCTTTTGTATCATGGAAAGGTGGAGCGATTATTGGAGTGCTTGACTTTGGGCGGGATGCTTGGATACATCGTGAAGACTGGATTAACAGTGGAATTTTTACTGGAAGTGGCAGAAAATACAAGGATTCTTACTATCTTCAAGCACAAGCGATGTGCTACATGAATTCCTAA 1779 43.0 MDYLKSVVPSQLIAERGSNLVVINPGSANIRIGLASQDAPFNVPHCIARYTNQVPKRNVQDQMLNSQVTTAQHMERERAYDVIASLLKIPFLDEEVANSSFPRKMGRVDGHGMHNGKKDTVFSWTDVHERDPTSPVAVESSSSKDVNHEPLDQRVDTDSKELTSSIIKYRQFICGEDALKISPSEPYCLHRPIRRGHLNISQHYPTQQVLEDLHAIWDWILIEKLHIPHSERNFYSAILVVPETFDNREIKEMLTIVLRDLRFGSAVVHQEGLAAVFGNGLSSACVVNVGSQVTTVICIEDGVALPATAKTLPFGGEDLSRCLLWTQRHHQTWPPICTDILSKPVDLLMLNRLKESYCEIREGEVDAVAVVHSYEEGTPPSSHKTRLTALNVPPMGLFFPMLLVPDVYPPPPRAWFHDYEDMLEETWQTEYSKRPDVPDNVYPGVNVNYPMWDSYPVYATKPKKEEKVGLAEAITSSILLTGRIDLQRKLFLSIQLVGGVALTRGLIPAMEERVLHAIPSNEAIDTVEVLQSRINPSFVSWKGGAIIGVLDFGRDAWIHREDWINSGIFTGSGRKYKDSYYLQAQAMCYMNS* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9456287 9473219 + CsaV3_3G012320.1 Csa03g01232 522137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01232 592 PANTHER ACTIN-RELATED PROTEIN 8 8 574 IPR027668 GO:0006338|GO:0031011
Csa03g01232 592 Gene3D - 468 539 - -
Csa03g01232 592 Gene3D - 540 567 - -
Csa03g01232 592 SUPERFAMILY Actin-like ATPase domain 280 568 IPR043129 -
Csa03g01232 592 Gene3D - 9 92 - -
Csa03g01232 592 Gene3D - 114 296 - -
Csa03g01232 592 SMART actin_3 18 580 IPR004000 -
Csa03g01232 592 MobiDBLite consensus disorder prediction 131 157 - -
Csa03g01232 592 Pfam Actin 19 567 IPR004000 -
Csa03g01232 592 SUPERFAMILY Actin-like ATPase domain 18 287 IPR043129 -
Csa03g01232 592 Gene3D Actin; Chain A, domain 4 301 403 - -
Csa03g01232 592 PANTHER ACTIN 8 574 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01232 K11673 ACTR8, ARP8, INO80N; actin-related protein 8 - csv:101213005 1209.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g649 . . . . . Bpe14g01242 . . . . . . Car06g01148 . . Cpe08g00323 Cpe03g01507 . . . . . . . . . . . . . . . . . . . . . Cme06g00511 Blo02g00729 . . Bda13g00075 . . Bma02g00795 . . . . . . . . . . . . . . . . . Cla05g00459 Cam05g0500 Cec05g0514 Cco05g0514 Clacu05g0501 Cmu05g0477 Cre05g0541 . Csa03g01232 Chy06g00485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01232 Csa_Chr03 FPKM 24.612543 27.359127 31.507751 32.981865 21.2855 20.485106 23.203777 56.828388 53.163864 62.381775