Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01238 ATGTCCGATGCAGAGAGAAAAACTGCCACCACCGTTGCACCCACGAGGCTGCAGAGCCAGGCTCCGGCATCCATCGAGATAAAGCGGGCGCTGAATTGGAACGTGGCCATACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGCTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACCAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGGGGTTGTCCGGGGTTGATCATCATCATCACCACCACCCGGCCGCGATTAATTCACCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGAAGCCGAGAAGATGACGACGACGACAACAATCGAGACGAGCCAAAAGAAGGCGCCGTGGAAGCCGGAACACGGAGGCCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCCCCAATCTTTGTCACACGTGATAGTCCCAACGCTCTCCGGAGCTACGTCTTAGAGGTCGCTGCCGGATCCGACGTGGCCGACTCCATCGCTCAATTCGCTCGTAAACGCCAGCGTGGCGTTTGTGTTCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCAGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTCGAGATTCTTTCGTTAACCGGTGCTTTTTTACCCGGTCCAGCTCCACCTGGCTCAACAGGTCTCACAGTTTACTTGTCGGGGGGTCAGGGCCAGGTCGTCGGTGGGAGCGTGGTTGGATCGCTTGTGGCTGCCGGTCCTATTATGGTAATTGCAGCTACTTTTGCTAATGCAACTTATGAAAGGTTGCCTCTTGAAGATCCTGATGAACATGAAGTTGGAAGTGGCTCCGCCTCACACGGTGGTCCTAGAAGTCCTCCGCCGGAAATTAGAGCCACTGGAGGAGGGCAGATGCCAGCTGGGATACCGGAACCCACTTTGCCTTTGTATAATTTACTGCCGGATATGATTCCCAACGGCGTTCAGCTTGGCCACGACGGGTATGCTTATGTCCGACCGCCGTATTGA 1116 54.03 MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPVGLSGVDHHHHHHPAAINSPIFKQSDENSGGSREDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDEHEVGSGSASHGGPRSPPPEIRATGGGQMPAGIPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9482124 9488545 + CsaV3_3G012380.1 Csa03g01238 522143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01238 371 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 292 IPR005175 -
Csa03g01238 371 MobiDBLite consensus disorder prediction 303 336 - -
Csa03g01238 371 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 305 - -
Csa03g01238 371 ProSiteProfiles PPC domain profile profile. 176 315 IPR005175 -
Csa03g01238 371 MobiDBLite consensus disorder prediction 103 173 - -
Csa03g01238 371 CDD DUF296 180 262 IPR005175 -
Csa03g01238 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 122 371 - -
Csa03g01238 371 Gene3D - 179 309 - -
Csa03g01238 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 122 371 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01081 Csa-Chr2:10540538 Csa03g01238 Csa-Chr3:9482124 2.81E-64 dispersed
Csa03g01238 Csa-Chr3:9482124 Csa05g00730 Csa-Chr5:5009609 3.51E-73 dispersed
Csa02g00284 Csa-Chr2:1943318 Csa03g01238 Csa-Chr3:9482124 4.38E-88 transposed
Csa02g01079 Csa-Chr2:10521532 Csa03g01238 Csa-Chr3:9482124 5.82E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01238 - - cpep:111790297 536.184