Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01242 ATGAAACTTTCTCGTCTTAATTCCCTCCGCCGAGTCCAGTCCGGTGACCTTATCATGAAGCTCCCTGATGACCACGATGATTCCAGACGGCCTCAATTCCCTCTTGATTCCACCTCTTACAAAATCATCGACGAAATTGGTGTCGGTGTCAGCGCCGTCGTGTATAAAGCCATCTGCATTCCTATGAACTCTGCAGTTGTGGCCATCAAAGCCATTGACCTCGATCGATCACGAGCGGATTTCGACGACATCCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCAAACATTCTAAATTCCCATTGCTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTCATGCCGTTCATGTCCGCTGGATCTTTACAGTCCATTATTACGTCCTCGTTTCCCGATGGCTTGCCGGAGCCCTGCATTGCCATTGTTCTTCGGGAAATTCTACACGCTCTCTCTTACCTCCACGACCAAGGCCATCTCCACCGCGATATTAAAGCCGGCAACATTCTTATAGACTCAAATGGGTCGATCAAGCTTGCTGATTTTGGAGTTTCCACGTCGATTTTCGAGTCGAATTCAAAACAGGGGGTGTCGATTTCTCCATTGTCTACGTCTATCATGCTGAAGGAAGTCGCCGGAACGCCATATTGGATGGCACCGGAGGTGATTCACTCGCACAATGGGTATAGTTTGAAAGCAGATATATGGTCTTTTGGAATCACAGCGTTGGAATTAGCCCATGGACGACCTCCCCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGGTTCTCCGATTATGAAAATCACCATAACAGTAAAAACAAGAACAAGTTCTCAAAAGGGTTTAAGGAATTGGTAGCGTCTTGCCTGGATCCGGAGCCATCGAGAAGACCCTGCGCTGAGAAATTGCTCAAACATCCATTCTTCAAAAACAGCAAGGGGCCTGATCTTCTCGTAAAAACTATATTACAAGGATTGCCGAGCGTCGAAGAGCGATTCAAATTGGGTAAATTACAGCGATTGCCGTCGATGAAAACCGAGGAAGAAGAGGAAGAAGAATTAGAGAAAGAGATTATAAAACAAAGGAGGATAAGTGGGTGGAATTTCAATGAAGATGGGTTAGAGCTAGACCCTGTTTTTCCAGGGGAAGAATGTTCAATCATGGAGGAGAAGGGTTCGGGGAATTCGAGCGAGTGCTGTTCGGGGCTGTCGGATCTGAGTTCACCAGTGGGGAATGAGAGGGGCGGCGGCAGCGGCGGGGGTGGAGGGGAGGAGGAGGAGGTTGTTGACAGAGAATCGATAGTGGGAGGATTGATGGCGCTGAAAAGGAGCTTAGATGAACAGAGAAGGGCGGTGGGAAGTTTGATAGAATTGATGGAAGGGGAGAAAGTGGGAGAGATGAGCAGAGAGGAGCAAATGGGGAGATTGATGGAGAAGGTGACGAGGGAATTGGAGAATGAGAGGAGGAGGAACTTTGAATTAGAGATGGAGTTGGAATTTCTTAGGCTTCAAATTTCTGCTTTTCATAATAATAACGATGGTGGTGCTTCGACCGCCATTAACAACTGA 1596 47.74 MKLSRLNSLRRVQSGDLIMKLPDDHDDSRRPQFPLDSTSYKIIDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNSHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAIVLREILHALSYLHDQGHLHRDIKAGNILIDSNGSIKLADFGVSTSIFESNSKQGVSISPLSTSIMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHHNSKNKNKFSKGFKELVASCLDPEPSRRPCAEKLLKHPFFKNSKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGEECSIMEEKGSGNSSECCSGLSDLSSPVGNERGGGSGGGGGEEEEVVDRESIVGGLMALKRSLDEQRRAVGSLIELMEGEKVGEMSREEQMGRLMEKVTRELENERRRNFELEMELEFLRLQISAFHNNNDGGASTAINN* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9531131 9533457 - CsaV3_3G012420.1 Csa03g01242 522147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01242 531 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 25 521 - -
Csa03g01242 531 Gene3D Transferase(Phosphotransferase) domain 1 122 371 - -
Csa03g01242 531 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Csa03g01242 531 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01242 531 MobiDBLite consensus disorder prediction 399 417 - -
Csa03g01242 531 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 25 521 - -
Csa03g01242 531 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Csa03g01242 531 Coils Coil 479 513 - -
Csa03g01242 531 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01242 531 Coils Coil 353 373 - -
Csa03g01242 531 MobiDBLite consensus disorder prediction 399 436 - -
Csa03g01242 531 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01242 531 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01242 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101215648 956.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01242 Csa-Chr3:9531131 Csa05g01916 Csa-Chr5:22320443 2.45E-112 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02327 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 5.8e-223 770.8
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.1e-67 253.4
Csa04g02327 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 1.0e-230 796.6
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.4e-67 254.6
Csa05g01193 . 4 830 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-240 828.9
Csa04g02327 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Csa05g01916 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.8 5.7e-255 877.1
Csa03g00090 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 3.0e-246 848.2
Csa03g00090 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 3.8e-246 847.8
Csa03g02963 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.7 2.1e-131 466.5
Csa03g00090 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 1.5e-118 423.7
Csa03g02963 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 6.2e-214 740.7
Csa05g01916 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.6e-102 370.2
Csa03g02963 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 7.3e-87 318.2
Csa03g00090 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.3e-75 278.1
Csa03g01242 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.6e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77979 PF00069 Pkinase 1.30E-59 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01242 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.438476 0.0 0.0 0.0 0.0