Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01242 ATGAAACTTTCTCGTCTTAATTCCCTCCGCCGAGTCCAGTCCGGTGACCTTATCATGAAGCTCCCTGATGACCACGATGATTCCAGACGGCCTCAATTCCCTCTTGATTCCACCTCTTACAAAATCATCGACGAAATTGGTGTCGGTGTCAGCGCCGTCGTGTATAAAGCCATCTGCATTCCTATGAACTCTGCAGTTGTGGCCATCAAAGCCATTGACCTCGATCGATCACGAGCGGATTTCGACGACATCCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCAAACATTCTAAATTCCCATTGCTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTCATGCCGTTCATGTCCGCTGGATCTTTACAGTCCATTATTACGTCCTCGTTTCCCGATGGCTTGCCGGAGCCCTGCATTGCCATTGTTCTTCGGGAAATTCTACACGCTCTCTCTTACCTCCACGACCAAGGCCATCTCCACCGCGATATTAAAGCCGGCAACATTCTTATAGACTCAAATGGGTCGATCAAGCTTGCTGATTTTGGAGTTTCCACGTCGATTTTCGAGTCGAATTCAAAACAGGGGGTGTCGATTTCTCCATTGTCTACGTCTATCATGCTGAAGGAAGTCGCCGGAACGCCATATTGGATGGCACCGGAGGTGATTCACTCGCACAATGGGTATAGTTTGAAAGCAGATATATGGTCTTTTGGAATCACAGCGTTGGAATTAGCCCATGGACGACCTCCCCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGGTTCTCCGATTATGAAAATCACCATAACAGTAAAAACAAGAACAAGTTCTCAAAAGGGTTTAAGGAATTGGTAGCGTCTTGCCTGGATCCGGAGCCATCGAGAAGACCCTGCGCTGAGAAATTGCTCAAACATCCATTCTTCAAAAACAGCAAGGGGCCTGATCTTCTCGTAAAAACTATATTACAAGGATTGCCGAGCGTCGAAGAGCGATTCAAATTGGGTAAATTACAGCGATTGCCGTCGATGAAAACCGAGGAAGAAGAGGAAGAAGAATTAGAGAAAGAGATTATAAAACAAAGGAGGATAAGTGGGTGGAATTTCAATGAAGATGGGTTAGAGCTAGACCCTGTTTTTCCAGGGGAAGAATGTTCAATCATGGAGGAGAAGGGTTCGGGGAATTCGAGCGAGTGCTGTTCGGGGCTGTCGGATCTGAGTTCACCAGTGGGGAATGAGAGGGGCGGCGGCAGCGGCGGGGGTGGAGGGGAGGAGGAGGAGGTTGTTGACAGAGAATCGATAGTGGGAGGATTGATGGCGCTGAAAAGGAGCTTAGATGAACAGAGAAGGGCGGTGGGAAGTTTGATAGAATTGATGGAAGGGGAGAAAGTGGGAGAGATGAGCAGAGAGGAGCAAATGGGGAGATTGATGGAGAAGGTGACGAGGGAATTGGAGAATGAGAGGAGGAGGAACTTTGAATTAGAGATGGAGTTGGAATTTCTTAGGCTTCAAATTTCTGCTTTTCATAATAATAACGATGGTGGTGCTTCGACCGCCATTAACAACTGA 1596 47.74 MKLSRLNSLRRVQSGDLIMKLPDDHDDSRRPQFPLDSTSYKIIDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNSHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAIVLREILHALSYLHDQGHLHRDIKAGNILIDSNGSIKLADFGVSTSIFESNSKQGVSISPLSTSIMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHHNSKNKNKFSKGFKELVASCLDPEPSRRPCAEKLLKHPFFKNSKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGEECSIMEEKGSGNSSECCSGLSDLSSPVGNERGGGSGGGGGEEEEVVDRESIVGGLMALKRSLDEQRRAVGSLIELMEGEKVGEMSREEQMGRLMEKVTRELENERRRNFELEMELEFLRLQISAFHNNNDGGASTAINN* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9531131 9533457 - CsaV3_3G012420.1 Csa03g01242 522147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01242 531 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 25 521 - -
Csa03g01242 531 Gene3D Transferase(Phosphotransferase) domain 1 122 371 - -
Csa03g01242 531 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Csa03g01242 531 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01242 531 MobiDBLite consensus disorder prediction 399 417 - -
Csa03g01242 531 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 25 521 - -
Csa03g01242 531 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Csa03g01242 531 Coils Coil 479 513 - -
Csa03g01242 531 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01242 531 Coils Coil 353 373 - -
Csa03g01242 531 MobiDBLite consensus disorder prediction 399 436 - -
Csa03g01242 531 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01242 531 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01242 Csa-Chr3:9531131 Csa05g01916 Csa-Chr5:22320443 2.45E-112 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77979 PF00069 Pkinase 1.30E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01242 K08835 - csv:101215648 956.436