Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01243 ATGGTTTCAGAAGCATGGCAAGGTGCCTATGTTACCCATCTCCGACCACTTCAAACTCTAATAAACAGAGCACAAATTCTGCTTCACTCCATTGCTCTCCTTCTCTTAATTTTCTACAGACTTTCATTTTTCTTCCTAAACCAACAACCCAAACACTTCTTTCCATGGCTTTTGGTTTTCATTTCTGAGCTTCTTCTTGCTTTCATTTGGCTACTTGGCCGAGCCTTTCGATGGCGCCCCCAAATTACCAAACATGTCCTACTTCCCCCGGACAAACTGAGGCCGCAGCTTCCGCTTCCCGCCATAGATGTTTTTATTTGCACTGCCGACCCGGAGAAGGAGCCCACCCTCGAAGTCATGAACACTCTGATTTCGGCCATGACTTTGGACTACCCACCCGATAAGCTTCACATTTACTTTTCCGACGACGCTGGCTCTCCGGTCACTCTACATGGGGTCAGAGAAGCGCGGCGGTTTTCACGCTGGTGGGTTCCCTTCTGCAGAAAGTATGGAATTACGCAGCCATGTCCCATGGCTTATTTCTCGCATGCCCCAGAGGATCGCCGCCGTGATATTCCGAGGGACGATGAATTTGTGGAGCAGAAGTTAATCAAAGAAAAGTATGAAGAGTTTAAGAATGGGATTAGGGATGGAACGAAAAAGTGGGCTGGAGATGCCGCCGTTAGCTCTCGTGTTGATCACCCTGCATTAGTCCAGATAATAAAGTGTAATAACGATGATAGCGATGATGGTGAAGAGAAATCAAGAAATGAAATAGAACTACCTCTACTTGTGTACGTAGCTCGGGAGAAAAAACCTTCACATCCACACCATTTCAAGGCTGGGGCCCTTAATGTTCTTCTGCGAGTGTCAGGAGCGATGAGCAATTCACCATACATATTAGTGTTGGATTGCGACATGTACTGCAATGACTCAACTTCAGCCCGTCAAGCAATGCAATTTCATCTTCATCCCCATTTCTCCAACTCTCTCTCTTTCGTTCAGTTCCCTCAAAAGTTCTACAATGCCACCAGAAACGACATTTACGACAGCCAACTCAGATCTTTCTTCACGGTGGAATGGTCCGGCATGAACAACCTTCAAGGTCCTGTTCTCTCCGGCACATGCTTTTACATCAAGAGGTTTTCCTTGTATGGAACATCCCCACATGATAAGGATTCTTCAAAGCATATTCGAGATTTCGAGGCATCTAACAAGTTCATCAAATCCATGAACGAGAATAACAGATCAAGAGATATTGCAGTGGAAGAGGCTCAGCATTTAGCTTCATGCACCTACGAAACTGGAAGTAAATGGGGTCAAAAGGTTGGGTTTTTCTACGATGCATTGGTGGAGGATTTCTTGACAGGTTTGGCTTTACATAGCCAAGGGTGGAGATCGGTTTTTAGCAATCCAGAGAGGCCACAGTTCTTAGGGAGTGGGACTACAAATCTAAACCAGGTGTTGCTTCAAGAAACAAGATGGAGCTCTGGGTTGTTAGAAGTCGCCACTTCGAGATTTTGCCCTCTGTTTTACGGCAGTCAAAGATCGATGATGAGTCTGTTGCAGAGAATGTGCTATGCTCAACTTTCCTTTTTTCCTTTGTATTATTCATTCCCCATATGGATCTTAGCTACCATCCCTCACCTCTGTTTGCTCCATGGGATACCTATTTTCCCTAAGGTTTCAAGTCCCTTCTTCCTAGTATATTGCTTCATCTTCATCTCAGCAACATTCTCTCACTTGCACGAGGTTTTAATTTCAGAAGGCTCAGTTAAAAAATGGCTAAACGAACAGAGGATATGGATGATAAAGGGAATCACTGCTCGTTCGTATGGAAGTTTAGATATTTTGATGAAGAAATTTGGGGCAAGAAATGTTAGCTTTGTTCCAACAAACAAAGTGACAGATGATGACCAAATGCAGAGGTACGAAATGGACGTGTATGATTTTCAAGCTTCAATCCTATTTCTTGCTCCAATGGCGGGCCTTGTCGTCTTGAATCTCGTCGCCTTAGCAGTCGGATTGGGGAGAATTGTAGCGAGTCTTGAAAATTGGGAGGAAACATTCGGGCAGCTCTTTCTTTGCTTCTATATATTGTTGATGAGTTTCCCTATCATAGAGGCCATGGTTTTAAGAACTGATAAAGCCTGCTTTCCATTTAAAGTCACTTTAGGATCCTCATTGGTTGTGTTGCTGTTTTTGTATTTGCTGTCTGTTTAG 2223 44.13 MVSEAWQGAYVTHLRPLQTLINRAQILLHSIALLLLIFYRLSFFFLNQQPKHFFPWLLVFISELLLAFIWLLGRAFRWRPQITKHVLLPPDKLRPQLPLPAIDVFICTADPEKEPTLEVMNTLISAMTLDYPPDKLHIYFSDDAGSPVTLHGVREARRFSRWWVPFCRKYGITQPCPMAYFSHAPEDRRRDIPRDDEFVEQKLIKEKYEEFKNGIRDGTKKWAGDAAVSSRVDHPALVQIIKCNNDDSDDGEEKSRNEIELPLLVYVAREKKPSHPHHFKAGALNVLLRVSGAMSNSPYILVLDCDMYCNDSTSARQAMQFHLHPHFSNSLSFVQFPQKFYNATRNDIYDSQLRSFFTVEWSGMNNLQGPVLSGTCFYIKRFSLYGTSPHDKDSSKHIRDFEASNKFIKSMNENNRSRDIAVEEAQHLASCTYETGSKWGQKVGFFYDALVEDFLTGLALHSQGWRSVFSNPERPQFLGSGTTNLNQVLLQETRWSSGLLEVATSRFCPLFYGSQRSMMSLLQRMCYAQLSFFPLYYSFPIWILATIPHLCLLHGIPIFPKVSSPFFLVYCFIFISATFSHLHEVLISEGSVKKWLNEQRIWMIKGITARSYGSLDILMKKFGARNVSFVPTNKVTDDDQMQRYEMDVYDFQASILFLAPMAGLVVLNLVALAVGLGRIVASLENWEETFGQLFLCFYILLMSFPIIEAMVLRTDKACFPFKVTLGSSLVVLLFLYLLSV* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9534685 9540217 - CsaV3_3G012430.1 Csa03g01243 522148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01243 740 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 15 738 - -
Csa03g01243 740 SUPERFAMILY Nucleotide-diphospho-sugar transferases 102 500 IPR029044 -
Csa03g01243 740 Pfam Cellulose synthase 102 398 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa03g01243 740 Pfam Cellulose synthase 403 734 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa03g01243 740 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 225 394 IPR029044 -
Csa03g01243 740 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 177 IPR029044 -
Csa03g01243 740 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN G2 15 738 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01243 - - - csv:101214210 1464.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01243 Csa-Chr3:9534685 Csa04g00681 Csa-Chr4:4618875 2.06E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g639 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00522 . . . . . . . . . . . . . . . . . Bhi12g01650 . . . . . . . . . . . . . . Csa03g01243 Chy06g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007282 0 2 0 0 0 1 0 1 1 1 1 1 2 1 1 0 1 2 0 1 1 2 1 2 2 3 3 2 0 4 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01243 Csa_Chr03 FPKM 4.74708 4.476214 0.145928 0.114384 1.752351 1.512802 1.549287 0.155547 0.135931 0.084929