Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01250 ATGGCTGGTGTTGTTAGTGAAGATGCTGTAGGGGTGAGGTCTGTGGAGAGTTTTGCAAATGGGCATCACAGTCAGTCTGGCGAAGCATTGGCTGAATGGAGGTCTTCTGAACAAGTGGAAAATGGAACACCATCAACTTCACCACCATACTGGGATACTGATGACGATGACGATGATGCTGGACCAAAACCTTCAGATTTGTATGGAAAACATACATGGAAGATAGAGAAATTTTCTCAACTTAACAAACGAGAACTTCGAAGTGATGCTTTTGAGGTTGGGGGCTACAAATGGTACATTTTAATTTATCCTCAGGGGTGTGATGTCTGCAATCATCTCTCCCTGTTTCTTTGTGTCGCAAATCATGACAAACTCCTTCCAGGTTGGAGCCATTTTGCACAATTTACAATAGCAGTGGTGAATAAGGATCCAAAGAAATCAAAATATTCTGATACGTTACATCGGTTCTGGAAGAAAGAACACGACTGGGGATGGAAAAAATTCATGGAGCTTTCAAAAGTGTTAGATGGTTTTATTGATGCTGACACTCTCATAATTAAGGCACAAGTTCAAGTGATTAGGGAGAGAGCTGACCGGCCTTTTCGTTGCCTTGATTGTCAGTATAGGAGAGAACTTGTTAGGGTATATTTGACTAATGTTGAGCAGATATGTCGGCGTTTTGTGGAGGAGAGAAGAAGCAAGCTGGGGAAGCTGATAGAGGATAAAGCTAGATGGTCAAGTTTCCGGGCTTTCTGGTTGGGAATTGACCAGAATGCTAGGCGGCGCATGTCTAGGGAAAAGACAGATGCAATTCTAAAAGTTGTTGTAAAACACTTCTTTATAGAGAAGGAGGTGACGTCTACTTTAGTGATGGACTCATTATACAGTGGATTGAAGGCTCTCGAAGGACATACCAAGAGTAAAAAAGGGAAAGCAAAACTATTAGATACTGAAGAGATAACAGCTCCAATAGTTCACATAGAGAAAGACACCTTCGTTTTGGTGGATGATGTTCTATTGCTGCTTGAGAGGGCTGCTGTGGAACCATTACCACCGAAAGATGAGAAGGGTCCTCAAAATCGTACTAAGGATGGTAGCTCTGGAGAAGACTTCAATAAAGATTCCATTGAACGCGACGAAAGGCGGCTTACCGAATTGGGACGTAGGACTGTGGAAATATTTGTCCTTGCCCATATATTTAGTAAAGTTGAAGTTGCCTATCAGGAGGCTATTGCATTGAAGAGGCAAGAGGAACTCATTCGTGAAGAAGAGGCAGCATGGCAGGCTGAAAGTGAACAAAAGGCTAGGCGATTAGCTTCAGAAAAGGATAAGAAATCAAAGAAAAAACAGGCTAAACAAAAACGTAACAACCGCAAAAGTAAGGATAAAGGGAGAGAAGAGAAGGCAAATTTGACTGCGCTGATCAGGGAACAAGTAAATCCTAGCAATGGGAAGGAGGAAGACACCATTGTGGATGAGGTGCAGGCCGTGGTTGAGAAGTCTGACTTGCCCGAGGGTGTGTCTGATGTCTCTGATTCTGTTGAAGGCGCTAGCGAATTACTTCAGCCTGATTCAGAGGACAGAGATGCCAGTCCTGTCAATTGGGACACTGACACATCAGAAGTTCATCCCTTAATGGAGGCGTGTAGCAGTGGCATTAGCAGTCTTTCTTCCGCCCAAACACCTTTATCTGACAAGAAGAGCTTGTCTGTTATGGATGATAGCTCTTCTACGTGTTCTACTGATTCTGTTCCATCAGTAGTAATGAACGGCCCTTATAAGGAGAATTCTTTTCACAACTATAAGAAGCAAAAATCACCTAGCGGTGGAAAGAATCAGCAGAAAGATGCAGCTTATGATCGGAACAGTTGTGCCAACGAGATGGATAATCAGTCATCAGAGCTTCCAGCTGACATAGAGGACCAAAGTGATGTTTGTGGTAGTAATAAGTCTAAAGAGTCTGATCCTGTGGCCATTAATCATTTCCTTCGGGGTAAAATAAAAAGGGTTGAACAGCAGGGAGTTAAGAAGGAAGAAAAGGTCGTTTCATTGCCAAAAGAGCGAAGTTCTAAAAACCAGGTTGATATGGAAAGGATACTTAGAGATGCATCAACAGCTGTGCCATCCTCCCTTCAGAATCACCAGGATCATATGCCACCAACTGTTGAACAGAAGTCAAGCAATCAGAGTGTTGCTGCTGTTGATTCCATTCCAATTAAAGTATCATCGTCAACTAGTGGACATCAGATGGAGAAGACTGTGCCTGTAGTTACCTCATCCCATGTTGTTAGTGCAGTAAAAGCAGAGGCTCAGAAGTCTACAATTCCAAAACCAACTGAAAAGGCTTCGGCACAGCAAGCTCCTATGATGTCAAGGCCTTCTAGTGCGCCTCTAATTCCTGGTCCAAGAGCTACAGCACCTGTTGTTAATGTAGTCCATACATCCCCATTGCTTGCCCGTTCAGTGAGTGCAGCTGGTCGGTTGGGTCCAGACCCTGCTCCAGCCACACATAGTTATGCTCCCCAGTCCTATAGAAACGCCATAATGGGCAACCATGTGGCTCCGAGCACTGCTGGATATGTTCACCTGAGCACCTCAACTTCAGGCGCCAGTCCATCAACTGCCTTCTCTTTGGCATCTGCTATGGTTTCTTCACCCATGTATGTACCACACAACTCTGAGAGGTTAGATCCAAATGCTGTTAGATCTAGTTATCCTTTCAGCATGGTAACTCGAGATGTCTTACCGAACAGTCCCCAGTGGGTTGAGGGTTCACAAAGGGAAGCTGTTAGGAGCATGCACTACAATTCTCCCCTTCTCAATGATGTTCAAGATTTATACAAGAAGCCGATTCGTGGCTCAACCCCTGATGTTCTATCTGCAGAGTTCCCGGCCTGTACGTCTGGTCGCCAGCTCCAAGGTTTTGCAGAGGAGTTCCCGCACCTCGATATAATTAACGACCTCCTTGATGATGAAAATATTGTTGGGATTTCTGCCAGAGACAACTCAATGTTCCAGTCTCTGGGAAATGGACCTACTCTGTTGAACCGGCAGTTCTCACTACCGGGTGATATGGGTGGGATGGCTGGCGATGTAGGGTCTTCAACAAGCTCTTGCAGGTTTGAGCGCACACGGAGTTATCATGATGGCGGTTTTCATCGGGGATATACATCTTCCATCAGTCATTACGAACCAACCATGGATTTTATTCCACCATCCAGTCAACAGCAACACTTAAACGGCCAGATCGATGGGTTGGTTCCAAATTGGCGAGCAACGTCTGATCTCTCTCTACTTGGGACAAGAACTTTAGACTTCGATGGTTACCAATATCTGAATGCAGAATATTCAAATATGGCACACGGGATGAACGGCTACAACGTCTTTCGACCTTCAGATGGGCATTGA 3408 44.66 MAGVVSEDAVGVRSVESFANGHHSQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDDAGPKPSDLYGKHTWKIEKFSQLNKRELRSDAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFIDADTLIIKAQVQVIRERADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRSKLGKLIEDKARWSSFRAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGHTKSKKGKAKLLDTEEITAPIVHIEKDTFVLVDDVLLLLERAAVEPLPPKDEKGPQNRTKDGSSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSKVEVAYQEAIALKRQEELIREEEAAWQAESEQKARRLASEKDKKSKKKQAKQKRNNRKSKDKGREEKANLTALIREQVNPSNGKEEDTIVDEVQAVVEKSDLPEGVSDVSDSVEGASELLQPDSEDRDASPVNWDTDTSEVHPLMEACSSGISSLSSAQTPLSDKKSLSVMDDSSSTCSTDSVPSVVMNGPYKENSFHNYKKQKSPSGGKNQQKDAAYDRNSCANEMDNQSSELPADIEDQSDVCGSNKSKESDPVAINHFLRGKIKRVEQQGVKKEEKVVSLPKERSSKNQVDMERILRDASTAVPSSLQNHQDHMPPTVEQKSSNQSVAAVDSIPIKVSSSTSGHQMEKTVPVVTSSHVVSAVKAEAQKSTIPKPTEKASAQQAPMMSRPSSAPLIPGPRATAPVVNVVHTSPLLARSVSAAGRLGPDPAPATHSYAPQSYRNAIMGNHVAPSTAGYVHLSTSTSGASPSTAFSLASAMVSSPMYVPHNSERLDPNAVRSSYPFSMVTRDVLPNSPQWVEGSQREAVRSMHYNSPLLNDVQDLYKKPIRGSTPDVLSAEFPACTSGRQLQGFAEEFPHLDIINDLLDDENIVGISARDNSMFQSLGNGPTLLNRQFSLPGDMGGMAGDVGSSTSSCRFERTRSYHDGGFHRGYTSSISHYEPTMDFIPPSSQQQHLNGQIDGLVPNWRATSDLSLLGTRTLDFDGYQYLNAEYSNMAHGMNGYNVFRPSDGH* 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9575112 9582738 + CsaV3_3G012500.1 Csa03g01250 522155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01250 1135 MobiDBLite consensus disorder prediction 768 794 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 431 470 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 776 792 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 18 50 - -
Csa03g01250 1135 ProSiteProfiles MATH/TRAF domain profile. 68 190 IPR002083 GO:0005515
Csa03g01250 1135 SUPERFAMILY TRAF domain-like 69 195 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 431 446 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 551 618 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 350 376 - -
Csa03g01250 1135 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1135 - -
Csa03g01250 1135 Pfam MATH domain 75 192 IPR002083 GO:0005515
Csa03g01250 1135 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 53 197 IPR008974 GO:0005515
Csa03g01250 1135 CDD MATH 69 191 IPR002083 GO:0005515
Csa03g01250 1135 SMART math_3 70 174 IPR002083 GO:0005515
Csa03g01250 1135 MobiDBLite consensus disorder prediction 602 618 - -
Csa03g01250 1135 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1135 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 551 587 - -
Csa03g01250 1135 MobiDBLite consensus disorder prediction 16 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01250 - - - csv:101215413 2118.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01250 Csa-Chr3:9575112 Csa03g03536 Csa-Chr3:31600018 1.41E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01250 Csa_Chr03 FPKM 10.432653 10.38998 20.992533 21.192356 15.250774 15.320605 16.32299 19.661203 19.705959 17.941385